halophFGD

Basic Information

Locus ID: Ag4G01603

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Legume lectin domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	220184575	220187258	-	Ag4G01603

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.83	76,926.68 Da	33.82	87.90	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	379	646	4.34925E-92	-
CDD	cd06899	lectin_legume_LecRK_Arcelin_ConA	28	252	7.58645E-75	IPR001220
Pfam	PF00139	Legume lectin domain	29	261	8.8E-57	IPR001220
Pfam	PF00069	Protein kinase domain	375	643	3.0E-51	IPR000719
SUPERFAMILY	SSF49899	Concanavalin A-like lectins/glucanases	27	261	2.29E-60	IPR013320
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	354	677	5.26E-80	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	449	667	1.6E-61	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	336	448	4.9E-31	-
Gene3D	G3DSA:2.60.120.200	-	26	270	2.4E-63	-
SMART	SM00220	serkin_6	373	646	5.1E-36	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	373	655	38.689716	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	379	403	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	492	504	-	IPR008271
ProSitePatterns	PS00307	Legume lectins beta-chain signature.	137	143	-	IPR019825
MobiDBLite	mobidb-lite	consensus disorder prediction	261	300	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G53380.1	Concanavalin A-like lectin protein kinase family protein.
RefSeq	XP_017237450.1	PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LFH9	L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK81 PE=2 SV=1
TrEMBL	A0A165ZX81	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009278 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	41.125786	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	29.294174	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	45.967987	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	38.578053	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	36.631783	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	53.0662	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	43.914467	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	59.570118	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.176252	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.872547	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.790472	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	18.205763	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.916726	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	9.727465	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.250029	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.70537	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.529708	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.319093	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.815552	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.835555	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.274566	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.783043	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	12.195133	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.453098	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.416693	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.242045	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.84625	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.175889	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.834171	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.238397		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.584412		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.102902		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.835979		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.604747		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.874277		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.397619		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.797575		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.933741		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.511425	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.520896	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.687114	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.621968	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.816271	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	15.363583	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.29066	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.49501	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	14.152524	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.980282	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.075651	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.521352	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14937, jg24610, jg32053, jg3451, jg38434, jg6392
Aizoaceae	Mesembryanthemum crystallinum	2	gene_5994, gene_7136
Amaranthaceae	Atriplex hortensis	3	Ah009067, Ah024303, Ah030271
Amaranthaceae	Beta vulgaris	2	BVRB_1g011030, BVRB_4g090510
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18526, Sbi_jg2078, Sbi_jg34438, Sbi_jg36924 ... Sbi_jg38658
Amaranthaceae	Salicornia europaea	4	Seu_jg10512, Seu_jg10513, Seu_jg2693, Seu_jg4801
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005803, GOSA_00017324, GOSA_00021061
Amaranthaceae	Suaeda glauca	7	Sgl10215, Sgl15417, Sgl15450, Sgl23568, Sgl28768, Sgl71194 ... Sgl74765
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000007652, gene:ENSEOMG00000016130 ... gene:ENSEOMG00000027972, gene:ENSEOMG00000036529, gene:ENSEOMG00000039807, gene:ENSEOMG00000042613, gene:ENSEOMG00000046867
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0014080, CQ.Regalona.r1.1BG0012070 ... CQ.Regalona.r1.2BG0001050, CQ.Regalona.r1.4BG0026050, CQ.Regalona.r1.7AG0017560
Anacardiaceae	Pistacia vera	3	pistato.v30038080, pistato.v30152960, pistato.v30154820
Apiaceae	Apium graveolens	9	Ag11G03722, Ag2G01686, Ag3G01103, Ag3G02684, Ag4G01603 ... Ag4G02453, Ag7G02095, AgUnG01278, AgUnG01279
Arecaceae	Cocos nucifera	5	COCNU_01G006260, COCNU_01G013740, COCNU_03G005480 ... COCNU_04G014310, COCNU_16G006800
Arecaceae	Phoenix dactylifera	5	gene-LOC103706664, gene-LOC103709868, gene-LOC103713307 ... gene-LOC103717805, gene-LOC120110470
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.555.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G17126, Ftri11G14807, Ftri13G07654, Ftri15G32468 ... Ftri16G11061, Ftri16G11132
Brassicaceae	Arabidopsis thaliana	4	AT3G53380.1, AT5G03140.1, AT5G42120.1, AT5G55830.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005258m.g.v1.0, Thhalv10010158m.g.v1.0 ... Thhalv10012869m.g.v1.0, Thhalv10015744m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g16310.v2.2, Sp5g08970.v2.2, Sp6g17710.v2.2 ... Sp6g39580.v2.2
Brassicaceae	Brassica nigra	4	BniB02g034530.2N, BniB02g067350.2N, BniB06g066070.2N ... BniB08g000960.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1487, Ceq03G1948, Ceq08G1298
Casuarinaceae	Casuarina glauca	3	Cgl01G1652, Cgl03G2096, Cgl08G1327
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g04200, gene.Cymno05g15670
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g32800, gene.Thate09g17180
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1403, evm.TU.LG05.2042, evm.TU.LG06.734
Plantaginaceae	Plantago ovata	3	Pov_00004352, Pov_00005128, Pov_00036905
Plumbaginaceae	Limonium bicolor	9	Lb2G08838, Lb2G11866, Lb2G15304, Lb4G23474, Lb4G24555 ... Lb4G24558, Lb4G25001, Lb4G25004, Lb4G26363
Poaceae	Echinochloa crus-galli	1	CH05.1024
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0130030, gene-QOZ80_2BG0185220 ... gene-QOZ80_5AG0406700, gene-QOZ80_5BG0454720, gene-QOZ80_6AG0517460, gene-QOZ80_6BG0469490
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0014410.1.CDS1 ... HORVU.MOREX.r3.1HG0071260.1.CDS1, HORVU.MOREX.r3.7HG0672450.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_009106, gene-QYE76_014175
Poaceae	Oryza coarctata	6	Oco03G009520, Oco04G009910, Oco09G001260, Oco10G001340 ... Oco11G007460, Oco12G007500
Poaceae	Oryza sativa	3	LOC_Os02g26160.1, LOC_Os05g03450.1, LOC_Os06g17490.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G126100, gene-BS78_09G026700 ... gene-BS78_10G120600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0500156
Poaceae	Sporobolus alterniflorus	5	Chr06G012000, Chr11G017790, Chr15G013770, Chr18G002060 ... Chr22G016050
Poaceae	Thinopyrum elongatum	3	Tel1E01G136400, Tel1E01G485600, Tel7E01G388300
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG009150, gene_TRIDC1AG044520 ... gene_TRIDC1BG011320, gene_TRIDC1BG050380, gene_TRIDC3AG066900, gene_TRIDC7AG027080, gene_TRIDC7BG017600
Poaceae	Triticum aestivum	9	TraesCS1A02G066200.1.cds1, TraesCS1A02G299900.1.cds1 ... TraesCS1B02G084500.1.cds1, TraesCS1B02G309800.1.cds1, TraesCS1D02G067200.1.cds1, TraesCS1D02G299200.1.cds1, TraesCS7A02G214400.1.cds1, TraesCS7B02G121700.1.cds1, TraesCS7D02G216300.1.cds1
Poaceae	Zea mays	4	Zm00001eb236670_P001, Zm00001eb265290_P001 ... Zm00001eb280870_P001, Zm00001eb355080_P001
Poaceae	Zoysia japonica	4	nbis-gene-19073, nbis-gene-44271, nbis-gene-50201 ... nbis-gene-54005
Poaceae	Zoysia macrostachya	3	Zma_g16287, Zma_g26343, Zma_g29507
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2312, evm.TU.LG08.678, evm.TU.LG19.755 ... evm.TU.LG24.746
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g36280, gene.Posoc03g08370
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1582, evm.TU.Scaffold_7_RagTag.1207 ... evm.TU.Scaffold_8_RagTag.1645
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18634, nbisL1-mrna-19685, nbisL1-mrna-5281 ... nbisL1-mrna-5378
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1096, nbisL1-mrna-21037, nbisL1-mrna-4013
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-13182, nbisL1-mrna-22340, nbisL1-mrna-3887
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000002l.146, add.evm.TU.utg000016l.233 ... add.evm.TU.utg000028l.12
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-18776, nbisL1-mrna-20294, nbisL1-mrna-7999
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18412, nbisL1-mrna-22588, nbisL1-mrna-504
Salicaceae	Populus euphratica	5	populus_peu00896, populus_peu11713, populus_peu14855 ... populus_peu17812, populus_peu25772
Solanaceae	Lycium barbarum	4	gene-LOC132607100, gene-LOC132618575, gene-LOC132622380 ... gene-LOC132630080
Solanaceae	Solanum chilense	4	SOLCI000061300, SOLCI000206800, SOLCI001791500 ... SOLCI002308500
Solanaceae	Solanum pennellii	4	gene-LOC107017442, gene-LOC107024605, gene-LOC107029450 ... gene-LOC107031961
Tamaricaceae	Reaumuria soongarica	3	STRG.2839_chr01_+, gene_13079, gene_895
Tamaricaceae	Tamarix chinensis	4	TC03G2847, TC05G2605, TC07G0671, TC09G1930
Zosteraceae	Zostera marina	1	Zosma01g18520.v3.1