Basic Information
Locus ID:
Ag4G01569
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the universal ribosomal protein uL23 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 217608838 | 217611613 | - | Ag4G01569 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.11 | 16,087.69 Da | 17.77 | 81.12 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03939 | Ribosomal protein L23, N-terminal domain | 13 | 62 | 9.5E-20 | IPR005633 |
| Gene3D | G3DSA:3.30.70.330 | - | 34 | 96 | 1.6E-20 | IPR012677 |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55280.3 | ribosomal protein L23AB. 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA. | 0 |
| RefSeq | XP_017227603.1 | PREDICTED: 60S ribosomal protein L23a [Daucus carota subsp. sativus] | 0 |
| Q9AT35 | Large ribosomal subunit protein uL23 OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1 | 0 | |
| TrEMBL | A0A164YKE7 | Ribosomal_L23eN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017890 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 84.072639 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 49.749592 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 49.559792 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 54.393425 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 59.253189 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 50.761543 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 46.64481 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 35.53545 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 77.914856 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 72.346794 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 77.280296 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 82.545296 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 74.492958 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 65.197495 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 49.893349 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 75.412857 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 72.044891 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 72.806473 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 74.119453 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 91.613693 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 84.368683 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 106.129799 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 115.945938 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 112.927589 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 117.103638 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 82.477219 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 71.734734 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 86.869576 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 97.309731 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 47.265011 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 51.99855 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 59.992817 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 90.722992 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 95.592506 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 114.172089 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 47.839592 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 29.132698 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 32.525181 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 72.083618 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 41.417133 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 27.214926 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 120.888138 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 87.812035 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 71.483215 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 60.329975 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 148.361588 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 59.469944 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 146.220596 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 115.887505 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 93.924713 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12853, jg14894, jg32091, jg32580 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12934, gene_19889 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah023780, Ah027125, Ah038285 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g037160, BVRB_9g204620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14518, Sbi_jg19945, Sbi_jg23446, Sbi_jg53778 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10396, Seu_jg17297 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012692, GOSA_00028099 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl63677, Sgl68175, Sgl78241, Sgl80733 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000012672, gene:ENSEOMG00000016569 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0005870, CQ.Regalona.r1.3AG0025390 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30059770 |
| Apiaceae | Apium graveolens | 3 | Ag2G02762, Ag4G01568, Ag4G01569 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G006190 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103712982, gene-LOC103717303, gene-LOC103723931 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1012.V1.1, AsparagusV1_10.1775.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G30743, Ftri6G09707, Ftri8G15409, Ftri9G13869 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G39460.1, AT3G55280.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010790m.g.v1.0, Thhalv10015923m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g21760.v2.2, Sp5g07180.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g005710.2N, BniB01g005730.2N, BniB06g005390.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G0719, Ceq08G2273, Ceq08G2276 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0731 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g15570, gene.Cymno05g16280 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0705s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33630, gene.Thate02g00700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-600 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1563, evm.TU.LG09.1338 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003321, Pov_00006384 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37259, Lb2G11337, Lb3G16339 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1244, AH07.2575, BH01.1321, BH01.1322, BH07.2386 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0137220, gene-QOZ80_2BG0192820 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002842, gene-QYE76_052910 |
| Poaceae | Oryza coarctata | 4 | Oco01G009860, Oco02G010260, Oco07G009870, Oco08G009650 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g24690.1, LOC_Os04g42270.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G027200, gene-BS78_10G027900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603562 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr06G008390, Chr09G026060, Chr13G007750, Chr15G009900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G622900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051280, gene_TRIDC2BG054940 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G354200.2, TraesCS2B02G375100.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb078210_P001, Zm00001eb281810_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29677, nbis-gene-37001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13876, Zma_g19996 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.1469, evm.TU.LG04.1470, evm.TU.LG04.2286 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g34740, gene.Posoc04g05290 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.286, evm.TU.Scaffold_13_RagTag.804 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24511, nbisL1-mrna-30233 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19684 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16172, nbisL1-mrna-19564 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.467, evm.TU.utg000027l.398 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015794, Maker00017854 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4387, nbisL1-mrna-5587 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11792, nbisL1-mrna-15002 |
| Salicaceae | Populus euphratica | 4 | populus_peu06380, populus_peu12509, populus_peu25862 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606870, gene-LOC132607069, gene-LOC132630213 |
| Solanaceae | Solanum chilense | 2 | SOLCI002760000, SOLCI006210500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107031585, gene-LOC107031855, gene-LOC107032335 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.29301_chr10_-, STRG.29302_chr10_+, gene_19 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3670, TC04G0047 |
| Zosteraceae | Zostera marina | 2 | Zosma06g08640.v3.1, Zosma06g14520.v3.1 |