halophFGD

Basic Information

Locus ID: Ag4G01568

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the universal ribosomal protein uL23 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	217605236	217607582	-	Ag4G01568

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.24	17,311.22 Da	25.06	81.63	-0.73

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00276	Ribosomal protein L23	73	135	3.0E-15	IPR013025
Pfam	PF03939	Ribosomal protein L23, N-terminal domain	13	62	1.1E-18	IPR005633
SUPERFAMILY	SSF54189	Ribosomal proteins S24e, L23 and L15e	71	146	1.62E-27	IPR012678
Gene3D	G3DSA:3.30.70.330	-	34	153	6.2E-53	IPR012677
TIGRFAM	TIGR03636	uL23_arch: ribosomal protein uL23	77	153	9.9E-29	IPR019985
ProSitePatterns	PS00050	Ribosomal protein L23 signature.	131	146	-	IPR001014
Hamap	MF_01369_A	50S ribosomal protein L23 [rplW].	73	153	22.17593	IPR013025

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02893 (large subunit ribosomal protein L23Ae)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G55280.3	ribosomal protein L23AB. 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA.
RefSeq	XP_017227603.1	PREDICTED: 60S ribosomal protein L23a [Daucus carota subsp. sativus]
Swiss-Prot	Q9AT35	Large ribosomal subunit protein uL23 OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1
TrEMBL	A0A164YKE7	Ribosomal_L23eN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017890 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	22.088491	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	32.310894	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.70072	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	16.559006	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.616011	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	19.224829	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.965336	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.182508	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	42.365936	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	36.795265	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	45.135918	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	49.323853	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	52.947319	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	45.502796	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.550577	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	16.442619	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.822018	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.861987	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	28.278053	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	30.232834	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	22.020231	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	27.806507	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	36.039783	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	24.103945	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.665232	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	16.531736	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	29.592104	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	32.825459	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.52599	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.127374		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.972836		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.99727		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.598043		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	39.844349		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.016538		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.669488		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.489316		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.837693		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	34.782379	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	27.278114	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	19.934793	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.637137	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	28.056238	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	21.631989	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	31.829153	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.246884	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	35.442173	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	70.76519	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	70.550316	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	59.341572	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg12853, jg14894, jg32091, jg32580
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12934, gene_19889
Amaranthaceae	Atriplex hortensis	3	Ah023780, Ah027125, Ah038285
Amaranthaceae	Beta vulgaris	2	BVRB_2g037160, BVRB_9g204620
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14518, Sbi_jg19945, Sbi_jg23446, Sbi_jg53778
Amaranthaceae	Salicornia europaea	2	Seu_jg10396, Seu_jg17297
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012692, GOSA_00028099
Amaranthaceae	Suaeda glauca	4	Sgl63677, Sgl68175, Sgl78241, Sgl80733
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000012672, gene:ENSEOMG00000016569 ... gene:ENSEOMG00000031652, gene:ENSEOMG00000036648, gene:ENSEOMG00000037820, gene:ENSEOMG00000045841, gene:ENSEOMG00000048440, gene:ENSEOMG00000051514
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0005870, CQ.Regalona.r1.3AG0025390 ... CQ.Regalona.r1.3BG0026330, CQ.Regalona.r1.9AG0002460, CQ.Regalona.r1.9BG0020040
Anacardiaceae	Pistacia vera	1	pistato.v30059770
Apiaceae	Apium graveolens	3	Ag2G02762, Ag4G01568, Ag4G01569
Arecaceae	Cocos nucifera	1	COCNU_09G006190
Arecaceae	Phoenix dactylifera	3	gene-LOC103712982, gene-LOC103717303, gene-LOC103723931
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1012.V1.1, AsparagusV1_10.1775.V1.1 ... AsparagusV1_Unassigned.1134.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G30743, Ftri6G09707, Ftri8G15409, Ftri9G13869
Brassicaceae	Arabidopsis thaliana	2	AT2G39460.1, AT3G55280.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10010790m.g.v1.0, Thhalv10015923m.g.v1.0 ... Thhalv10017366m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g21760.v2.2, Sp5g07180.v2.2
Brassicaceae	Brassica nigra	6	BniB01g005710.2N, BniB01g005730.2N, BniB06g005390.2N ... BniB06g056850.2N, BniB08g025450.2N, BniB08g069680.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0719, Ceq08G2273, Ceq08G2276
Casuarinaceae	Casuarina glauca	1	Cgl02G0731
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g15570, gene.Cymno05g16280
Dunaliellaceae	Dunaliella salina	1	Dusal.0705s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g33630, gene.Thate02g00700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-600
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1563, evm.TU.LG09.1338
Plantaginaceae	Plantago ovata	2	Pov_00003321, Pov_00006384
Plumbaginaceae	Limonium bicolor	3	Lb0G37259, Lb2G11337, Lb3G16339
Poaceae	Echinochloa crus-galli	9	AH01.1244, AH07.2575, BH01.1321, BH01.1322, BH07.2386 ... BH09.1652, CH01.1367, CH01.1369, CH07.2459
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0137220, gene-QOZ80_2BG0192820 ... gene-QOZ80_4AG0311720, gene-QOZ80_4BG0343020
Poaceae	Lolium multiflorum	2	gene-QYE76_002842, gene-QYE76_052910
Poaceae	Oryza coarctata	4	Oco01G009860, Oco02G010260, Oco07G009870, Oco08G009650
Poaceae	Oryza sativa	2	LOC_Os01g24690.1, LOC_Os04g42270.2
Poaceae	Paspalum vaginatum	2	gene-BS78_10G027200, gene-BS78_10G027900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0603562
Poaceae	Sporobolus alterniflorus	10	Chr06G008390, Chr09G026060, Chr13G007750, Chr15G009900 ... Chr23G009520, Chr23G016200, Chr25G010240, Chr26G003780, Chr26G010210, Chr30G009970
Poaceae	Thinopyrum elongatum	1	Tel2E01G622900
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG051280, gene_TRIDC2BG054940
Poaceae	Triticum aestivum	3	TraesCS2A02G354200.2, TraesCS2B02G375100.1 ... TraesCS2D02G354800.2
Poaceae	Zea mays	4	Zm00001eb078210_P001, Zm00001eb281810_P001 ... Zm00001eb416850_P001, Zm00001eb425920_P001
Poaceae	Zoysia japonica	2	nbis-gene-29677, nbis-gene-37001
Poaceae	Zoysia macrostachya	2	Zma_g13876, Zma_g19996
Portulacaceae	Portulaca oleracea	5	evm.TU.LG04.1469, evm.TU.LG04.1470, evm.TU.LG04.2286 ... evm.TU.LG05.1993, evm.TU.LG06.24
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g34740, gene.Posoc04g05290
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.286, evm.TU.Scaffold_13_RagTag.804
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-24511, nbisL1-mrna-30233
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19684
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16172, nbisL1-mrna-19564
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.467, evm.TU.utg000027l.398
Rhizophoraceae	Kandelia obovata	2	Maker00015794, Maker00017854
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-4387, nbisL1-mrna-5587
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11792, nbisL1-mrna-15002
Salicaceae	Populus euphratica	4	populus_peu06380, populus_peu12509, populus_peu25862 ... populus_peu35631
Solanaceae	Lycium barbarum	3	gene-LOC132606870, gene-LOC132607069, gene-LOC132630213
Solanaceae	Solanum chilense	2	SOLCI002760000, SOLCI006210500
Solanaceae	Solanum pennellii	3	gene-LOC107031585, gene-LOC107031855, gene-LOC107032335
Tamaricaceae	Reaumuria soongarica	3	STRG.29301_chr10_-, STRG.29302_chr10_+, gene_19
Tamaricaceae	Tamarix chinensis	2	TC01G3670, TC04G0047
Zosteraceae	Zostera marina	2	Zosma06g08640.v3.1, Zosma06g14520.v3.1