Basic Information
Locus ID:
Ag4G01537
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
MUS81
Description:
Crossover junction endonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 208228071 | 208237706 | + | Ag4G01537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 76,299.96 Da | 48.59 | 80.12 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02732 | ERCC4 domain | 425 | 554 | 9.8E-20 | IPR006166 |
| SUPERFAMILY | SSF52980 | Restriction endonuclease-like | 418 | 563 | 4.02E-27 | IPR011335 |
| Gene3D | G3DSA:1.10.150.670 | - | 600 | 675 | 5.6E-13 | IPR042530 |
| Gene3D | G3DSA:3.40.50.10130 | - | 415 | 563 | 3.1E-25 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 93 | 216 | 4.0E-29 | IPR036388 |
| SMART | SM00891 | ERCC4_2 | 421 | 521 | 2.9E-23 | IPR006166 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30870.1 | Restriction endonuclease, type II-like superfamily protein. Encodes an Arabidopsis homolog of the endonuclease MSU81. T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant. | 0 |
| RefSeq | XP_017238472.1 | PREDICTED: crossover junction endonuclease MUS81 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q5W9E7 | Crossover junction endonuclease MUS81 OS=Arabidopsis thaliana OX=3702 GN=MUS81 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZUS0 | Crossover junction endonuclease MUS81 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009210 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.891351 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.112673 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.445819 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.073686 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.481815 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.659172 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.647085 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.064235 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.96779 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.966352 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.362926 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.734096 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.101773 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.345234 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.230699 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.976701 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.561777 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.12226 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.428806 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.178551 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.221251 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.017557 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.706694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.77049 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.816599 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.242815 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.67153 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.707037 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.318855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.582867 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.556482 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.106233 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.193169 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.592759 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.46175 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.25245 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.030733 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.282834 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.21108 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.457878 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.107426 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.034871 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.578438 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.17183 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.524091 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.100222 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.000981 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.150693 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.224928 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.555896 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26637 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032470 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg43376 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18516 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004279 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66314, Sgl70646 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013359, gene:ENSEOMG00000014104 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003690, CQ.Regalona.r1.2BG0006250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229470 |
| Apiaceae | Apium graveolens | 2 | Ag4G01537, Ag6G01802 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G008500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705658 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1616.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G01521 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G30870.1, AT5G39770.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024629m.g.v1.0, Thhalv10024809m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g22360.v2.2, Sp5g22380.v2.2, Sp6g04870.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g007530.2N, BniB08g048530.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0832, Ceq05G0837 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0846 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12440 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0110s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.127 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014841, Pov_00014842 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12977, Lb2G12983 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4490, AH02.4491, BH02.4542, BH02.4543, CH02.4593 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0046310, gene-QOZ80_1AG0046320 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0257160.2, HORVU.MOREX.r3.3HG0319570.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_052456, gene-QYE76_058004, gene-QYE76_058005 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G030990 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g71960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_K139900, gene-BS78_K140000 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0207367, Pt_Chr0207369, Pt_Chr0207371, Pt_Chr0603752 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G001170, Chr02G001180, Chr05G033490, Chr08G018330 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G325100, Tel3E01G781400, Tel3E01G781600 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC1BG015150, gene_TRIDC1BG017830 ... |
| Poaceae | Triticum aestivum | 16 | TraesCS1B02G105000.1, TraesCS1B02G122400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb141330_P003, Zm00001eb141350_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10849, nbis-gene-10851 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9369 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.356, evm.TU.LG17.351 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1443 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8514 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10353, nbisL1-mrna-16193 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15226 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.158 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003283 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9499 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18811 |
| Salicaceae | Populus euphratica | 1 | populus_peu35107 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644852 |
| Solanaceae | Solanum chilense | 1 | SOLCI002479000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005575 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9469 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0381 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31350.v3.1 |