halophFGD

Basic Information

Locus ID: Ag4G01536

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	208130905	208132564	-	Ag4G01536

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.91	51,685.27 Da	41.20	103.02	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	107	389	1.0E-38	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	85	393	3.1E-69	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	71	178	5.5E-26	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	179	408	2.2E-53	-
SMART	SM00220	serkin_6	103	392	3.2E-18	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	103	398	33.502541	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	233	245	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	109	131	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G20050.1	Protein kinase superfamily protein.
RefSeq	XP_017240606.1	PREDICTED: probable receptor-like protein kinase At5g20050 [Daucus carota subsp. sativus]
Swiss-Prot	Q94C25	Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana OX=3702 GN=At5g20050 PE=2 SV=1
TrEMBL	A0A165ZUR2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009209 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.127799	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.645502	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.921568	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.742968	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.589802	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.052488	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.533468	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.648011	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.964865	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.520908	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.590185	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.962469	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.059406	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.562148	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.038381	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.040683	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.165911	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.230903	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.155922	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.032641		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.129039		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.060139		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.037931		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.915332	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.432442	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.651102	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.291905	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.031256	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.018595	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.296581	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.993061	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.954243	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg15550
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9019
Amaranthaceae	Atriplex hortensis	1	Ah014430
Amaranthaceae	Beta vulgaris	2	BVRB_8g195130, BVRB_8g195140
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg24837, Sbi_jg24838, Sbi_jg8705
Amaranthaceae	Salicornia europaea	2	Seu_jg19903, Seu_jg19904
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007909, GOSA_00007910
Amaranthaceae	Suaeda glauca	4	Sgl42093, Sgl42094, Sgl46866, Sgl46867
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000032923, gene:ENSEOMG00000034782 ... gene:ENSEOMG00000046509, gene:ENSEOMG00000046765
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.8AG0021170, CQ.Regalona.r1.8BG0021190 ... CQ.Regalona.r1.8BG0021200
Anacardiaceae	Pistacia vera	1	pistato.v30255610
Apiaceae	Apium graveolens	1	Ag4G01536
Arecaceae	Cocos nucifera	1	scaffold002253G000030
Arecaceae	Phoenix dactylifera	2	gene-LOC103705442, gene-LOC103721678
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2424.V1.1, AsparagusV1_01.2425.V1.1 ... AsparagusV1_01.3130.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G25474, Ftri3G10658
Brassicaceae	Arabidopsis thaliana	1	AT5G20050.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10013470m.g.v1.0
Brassicaceae	Brassica nigra	1	BniB08g010230.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0672
Casuarinaceae	Casuarina glauca	1	Cgl06G0697
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g10460
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g13110
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.999
Plantaginaceae	Plantago ovata	1	Pov_00005433
Poaceae	Echinochloa crus-galli	1	CH06.275
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0026600, gene-QOZ80_1BG0076890 ... gene-QOZ80_6BG0460510
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0002440.1, HORVU.MOREX.r3.3HG0330890.1 ... HORVU.MOREX.r3.3HG0241920.1.CDS1, HORVU.MOREX.r3.7HG0649340.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_027822
Poaceae	Oryza coarctata	5	Oco02G016150, Oco05G017460, Oco06G018140, Oco11G002020 ... Oco12G001990
Poaceae	Oryza sativa	2	LOC_Os01g46030.1, LOC_Os06g05070.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G186300, gene-BS78_03G212100 ... gene-BS78_03G212200, gene-BS78_10G034300
Poaceae	Sporobolus alterniflorus	3	Chr05G019580, Chr08G012830, Chr11G023190
Poaceae	Thinopyrum elongatum	2	Tel5E01G432600, Tel7E01G189700
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG058110, gene_TRIDC7AG010460
Poaceae	Triticum aestivum	4	TraesCS1B02G018600.1.cds1, TraesCS4A02G390900.1.cds1 ... TraesCS7A02G091000.1.cds1, TraesCS7D02G086800.1
Poaceae	Zea mays	1	Zm00001eb377370_P001
Poaceae	Zoysia japonica	2	nbis-gene-25912, nbis-gene-40379
Poaceae	Zoysia macrostachya	2	Zma_g10760, Zma_g29086
Portulacaceae	Portulaca oleracea	1	evm.TU.LG23.1158
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g12370
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.357
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13184, nbisL1-mrna-13212
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-3727
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16760
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000033l.76
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-23488
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-14731
Salicaceae	Populus euphratica	2	populus_peu05089, populus_peu31248
Solanaceae	Lycium barbarum	1	gene-LOC132605606
Solanaceae	Solanum chilense	1	SOLCI001973900
Solanaceae	Solanum pennellii	1	gene-LOC107022042
Tamaricaceae	Reaumuria soongarica	1	gene_9543
Tamaricaceae	Tamarix chinensis	1	TC12G1225
Zosteraceae	Zostera marina	1	Zosma01g07800.v3.1