Basic Information
Locus ID:
Ag4G01532
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 207381616 | 207384547 | + | Ag4G01532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 37,817.56 Da | 68.22 | 57.74 | -0.83 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25910.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_017237588.1 | PREDICTED: uncharacterized protein LOC108210709 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162AG67 | Zinc finger, RING/FYVE/PHD-type OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009205 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 31.086687 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.961233 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.520279 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 32.724834 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 31.962873 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.593006 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 33.871006 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 46.621117 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.282539 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.685145 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.407438 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.362993 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.386604 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.083136 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.429583 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.178789 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.246753 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.940302 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.250623 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.8627 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.050705 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.215555 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.717831 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.578548 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.668918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.013083 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.967037 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.612428 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.188502 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.187632 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.313649 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.660186 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 39.946281 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.65856 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.88332 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.883924 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 14.868329 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.2915 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.640612 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.761658 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.564364 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.580828 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 42.289131 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 75.050827 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 90.040482 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.85445 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 63.367756 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.366884 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.189291 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.595703 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13516 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10662 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014421 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g195060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40782, Sbi_jg50762 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2316 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007914 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42088, Sgl46861 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010736, gene:ENSEOMG00000030392 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0021210, CQ.Regalona.r1.8BG0021160 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30127680, pistato.v30128720, pistato.v30255580 |
| Apiaceae | Apium graveolens | 2 | Ag2G02812, Ag4G01532 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G000300, COCNU_14G000150 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698893, gene-LOC103721295 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.710.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri14G22007, Ftri15G24297, Ftri3G24700, Ftri4G22677 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G25910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004489m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g15150.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g066540.2N, BniB04g008160.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0557, Ceq06G0667 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0662, Cgl06G0691 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-101 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.440, evm.TU.LG07.996 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000906, Pov_00005446, Pov_00015464 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2314, AH02.2315, AH06.1438, BH02.2421, CH02.2598 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024280, gene-QOZ80_1BG0074970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0271250.2.CDS2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053754 |
| Poaceae | Oryza coarctata | 2 | Oco01G014420, Oco02G014690 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g42700.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G193300 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G015580, Chr03G010970, Chr05G018230, Chr08G011120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G376700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG032850, gene_TRIDC3BG037340 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G219400.1.cds1, TraesCS3B02G249800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb161920_P001, Zm00001eb358060_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29264, nbis-gene-29517 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10647, Zma_g8205 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG23.1160 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g15660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.355, evm.TU.Scaffold_4_RagTag.1985 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13186, nbisL1-mrna-13214 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15028, nbisL1-mrna-3725 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16758, nbisL1-mrna-4763 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.427, evm.TU.utg000033l.237 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001376, Maker00015080 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22492, nbisL1-mrna-23489 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14729, nbisL1-mrna-21017 |
| Salicaceae | Populus euphratica | 2 | populus_peu05086, populus_peu09174 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132598647, gene-LOC132601670, gene-LOC132603657 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI001600100, SOLCI004505400, SOLCI004752900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005795, gene-LOC107007308, gene-LOC107021203 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1604_chr01_-, STRG.3625_chr02_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G1672, TC12G1219 |