Basic Information
Locus ID:
Ag4G01531
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
deoxyribonuclease TATDN1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 207123369 | 207134434 | - | Ag4G01531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 66,512.94 Da | 41.64 | 76.77 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 512 | 550 | 0.00853717 | - |
| CDD | cd01310 | TatD_DNAse | 4 | 236 | 1.0489E-61 | IPR001130 |
| Pfam | PF13878 | zinc-finger of acetyl-transferase ESCO | 332 | 370 | 3.3E-14 | IPR028005 |
| Pfam | PF13880 | ESCO1/2 acetyl-transferase | 521 | 588 | 5.1E-26 | IPR028009 |
| Pfam | PF01026 | TatD related DNase | 4 | 235 | 3.2E-41 | IPR001130 |
| SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 4 | 236 | 1.2E-52 | IPR032466 |
| Gene3D | G3DSA:3.40.630.30 | - | 409 | 574 | 3.4E-5 | - |
| Gene3D | G3DSA:3.20.20.140 | - | 1 | 242 | 2.8E-88 | - |
| ProSitePatterns | PS01090 | TatD deoxyribonuclease family signature 2. | 83 | 93 | - | IPR018228 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52390.1 | TatD related DNase. | 0 |
| RefSeq | XP_017239015.1 | PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Daucus carota subsp. sativus] | 0 |
| A7UL74 | Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Arabidopsis thaliana OX=3702 GN=CTF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZU03 | Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009179 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.528641 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.091798 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.292468 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.891258 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.842302 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.38617 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.353434 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.231853 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.343699 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.56963 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.355659 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.344466 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.21435 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.786906 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.39515 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.657958 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.163744 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.814815 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.591306 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.056025 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.238823 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.960686 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.460996 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.073655 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.990471 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.151175 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.284492 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.856941 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.08384 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.400463 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.339442 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.908282 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.541296 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.739305 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.383067 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.700428 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.276831 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.913807 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.956445 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.492349 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.475721 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.401445 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.851834 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.833401 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.606674 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.393169 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.118532 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.043158 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.800094 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.687942 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18890, jg33373, jg3652 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15255 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003108 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108630 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg56536 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13756 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001828 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl32073, Sgl37372, Sgl51450, Sgl56738 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005096, gene:ENSEOMG00000020872 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0011720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276750 |
| Apiaceae | Apium graveolens | 1 | Ag4G01531 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008210 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722489 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3406.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16682 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G52390.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010578m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g09900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g066520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0799 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0905 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0336s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2953 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1896 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17688 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.269, BH03.347, CH03.420 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0556050, gene-QOZ80_7BG0586990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0152160.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042555 |
| Poaceae | Oryza coarctata | 1 | Oco14G001760 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g06410.4, LOC_Os07g06440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G038100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303551 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001310, Chr28G001110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G458400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG033460, gene_TRIDC2BG039130 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G249700.1, TraesCS2B02G271200.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb002330_P001, Zm00001eb083350_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35751 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4753 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2772, evm.TU.LG16.898 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1062 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4125 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18170 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10161 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.608 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005969 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12517 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5690 |
| Salicaceae | Populus euphratica | 1 | populus_peu25978 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629962 |
| Solanaceae | Solanum chilense | 1 | SOLCI001038000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022993 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15994_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0669 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27580.v3.1 |