halophFGD

Basic Information

Locus ID: Ag4G01504

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CTR1

Description: Serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	203592761	203606665	+	Ag4G01504

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.91	88,781.23 Da	49.63	80.51	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13999	STKc_MAP3K-like	530	778	4.81125E-129	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	525	778	5.1E-70	IPR001245
Pfam	PF14381	Ethylene-responsive protein kinase Le-CTR1	162	368	2.4E-78	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	499	778	2.02E-83	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	603	790	7.4E-63	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	517	602	1.0E-38	-
SMART	SM00220	serkin_6	524	782	1.2E-65	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	524	782	46.378613	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	645	657	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	530	551	-	IPR017441
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	749	771	1.8E-12	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	705	727	1.8E-12	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	639	657	1.8E-12	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	598	611	1.8E-12	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	686	696	1.8E-12	IPR001245
MobiDBLite	mobidb-lite	consensus disorder prediction	446	460	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	445	464	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K14510 (serine/threonine-protein kinase CTR1 [EC:2.7.11.1])

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant) ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G03730.1	Protein kinase superfamily protein. Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.
RefSeq	XP_017241869.1	PREDICTED: serine/threonine-protein kinase CTR1 [Daucus carota subsp. sativus]
Swiss-Prot	Q05609	Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana OX=3702 GN=CTR1 PE=1 SV=1
TrEMBL	A0A165ZU60	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009186 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	15.396952	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.023705	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	16.415075	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	17.669985	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.997728	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.223042	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	18.636448	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	19.943024	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	29.15572	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	29.602629	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	32.493149	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	30.460945	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	30.626717	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	24.752815	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.57825	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.032765	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.14834	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.313663	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	17.14942	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	25.685061	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	29.715113	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	17.038963	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	22.120209	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.587862	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	19.713078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.814905	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	22.169575	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.311609	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	20.608343	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.063796		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.062844		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.400044		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.104259		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.425093		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.305532		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.425439		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.182711		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.761239		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	20.222109	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	18.787554	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	12.536173	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	52.314644	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	48.639336	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	31.68891	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	32.634708	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	42.0313	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	31.708395	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.129099	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.889664	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.433847	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10783, jg15045, jg37399, jg6145
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1143, gene_20243
Amaranthaceae	Atriplex hortensis	2	Ah023611, Ah030893
Amaranthaceae	Beta vulgaris	2	BVRB_1g005600, BVRB_7g160290
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg27452, Sbi_jg33187, Sbi_jg4252
Amaranthaceae	Salicornia europaea	2	Seu_jg5686, Seu_jg7916
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000969, GOSA_00012283
Amaranthaceae	Suaeda glauca	4	Sgl10657, Sgl15908, Sgl71389, Sgl74978
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007468, gene:ENSEOMG00000016093 ... gene:ENSEOMG00000034986, gene:ENSEOMG00000037689, gene:ENSEOMG00000041290, gene:ENSEOMG00000048317
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0009950, CQ.Regalona.r1.7AG0019620 ... CQ.Regalona.r1.7BG0022240
Anacardiaceae	Pistacia vera	4	pistato.v30042070, pistato.v30170010, pistato.v30274720 ... pistato.v30275120
Apiaceae	Apium graveolens	2	Ag10G02849, Ag4G01504
Arecaceae	Cocos nucifera	3	COCNU_01G003000, scaffold000320G000020 ... scaffold000320G000050
Arecaceae	Phoenix dactylifera	2	gene-LOC103695480, gene-LOC103716188
Asparagaceae	Asparagus officinalis	2	AsparagusV1_08.639.V1.1, AsparagusV1_Unassigned.527.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G08757, Ftri11G19402, Ftri11G29476, Ftri17G08589 ... Ftri1G18384, Ftri6G21260
Brassicaceae	Arabidopsis thaliana	2	AT4G24480.1, AT5G03730.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10012708m.g.v1.0, Thhalv10024333m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g38990.v2.2, Sp7g22470.v2.2
Brassicaceae	Brassica nigra	3	BniB02g056810.2N, BniB05g012730.2N, BniB08g001250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1497, Ceq05G1186
Casuarinaceae	Casuarina glauca	3	Cgl02G1552, Cgl03G1152, Cgl05G1198
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g16340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-1159, nbisL1-mrna-1166, nbisL1-mrna-1901 ... nbisL1-mrna-8798
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2134, evm.TU.LG02.1235, evm.TU.LG06.237
Plantaginaceae	Plantago ovata	2	Pov_00004913, Pov_00026714
Plumbaginaceae	Limonium bicolor	5	Lb4G23035, Lb4G23052, Lb7G34012, Lb7G34531, Lb7G34794
Poaceae	Echinochloa crus-galli	9	AH03.1092, AH07.2019, AH09.2258, BH03.1253, BH07.1983 ... BH09.2435, CH03.1395, CH07.1838, CH09.2582
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0132640, gene-QOZ80_2BG0188030 ... gene-QOZ80_4AG0304440, gene-QOZ80_4BG0335300, gene-QOZ80_6AG0525500, gene-QOZ80_6BG0479150
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0191490.1, HORVU.MOREX.r3.4HG0332630.1
Poaceae	Lolium multiflorum	7	gene-QYE76_006900, gene-QYE76_022676, gene-QYE76_027263 ... gene-QYE76_027264, gene-QYE76_046202, gene-QYE76_071900, gene-QYE76_071901
Poaceae	Oryza coarctata	4	Oco03G011440, Oco07G015640, Oco17G012050, Oco18G012020
Poaceae	Oryza sativa	4	LOC_Os02g32610.2, LOC_Os04g52140.1, LOC_Os09g39320.1 ... LOC_Os12g10690.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G130700, gene-BS78_04G149400 ... gene-BS78_06G223900
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0204466, Pt_Chr0204473, Pt_Chr0301275, Pt_Chr0306845 ... Pt_Chr0700505, Pt_Chr0700559
Poaceae	Sporobolus alterniflorus	8	Chr06G010730, Chr10G005740, Chr11G013510, Chr11G013530 ... Chr15G012300, Chr21G008760, Chr23G004090, Chr26G015300
Poaceae	Thinopyrum elongatum	2	Tel2E01G724000, Tel4E01G028300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG061460, gene_TRIDC2BG065180 ... gene_TRIDC4AG046260, gene_TRIDC4BG002110
Poaceae	Triticum aestivum	6	TraesCS2A02G426200.3, TraesCS2B02G446500.2 ... TraesCS2D02G424300.1, TraesCS4A02G302000.1, TraesCS4B02G012100.1, TraesCS4D02G010200.1
Poaceae	Zea mays	3	Zm00001eb071130_P001, Zm00001eb096080_P001 ... Zm00001eb242490_P003
Poaceae	Zoysia japonica	5	nbis-gene-18909, nbis-gene-22830, nbis-gene-54245 ... nbis-gene-5824, nbis-gene-59248
Poaceae	Zoysia macrostachya	4	Zma_g16400, Zma_g20422, Zma_g21951, Zma_g29860
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.736, evm.TU.LG04.1597, evm.TU.LG04.45 ... evm.TU.LG07.1010, evm.TU.LG10.1314, evm.TU.LG15.942
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g22910
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1063, evm.TU.Scaffold_7_RagTag.902 ... evm.TU.Scaffold_1_RagTag.1454
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13439, nbisL1-mrna-19371, nbisL1-mrna-6136
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4522, nbisL1-mrna-9733
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3998, nbisL1-mrna-6736
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.697, evm.TU.utg000016l.481
Rhizophoraceae	Kandelia obovata	2	Maker00010359, Maker00016267
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-13066, nbisL1-mrna-16300, nbisL1-mrna-7655
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10152, nbisL1-mrna-430
Salicaceae	Populus euphratica	4	populus_peu06138, populus_peu11584, populus_peu19998 ... populus_peu32128
Solanaceae	Lycium barbarum	3	gene-LOC132607164, gene-LOC132627640, gene-LOC132629907
Solanaceae	Solanum chilense	4	SOLCI002574600, SOLCI003110600, SOLCI003411600 ... SOLCI003780600
Solanaceae	Solanum pennellii	4	gene-LOC107002322, gene-LOC107017026, gene-LOC107031677 ... gene-LOC107031853
Tamaricaceae	Reaumuria soongarica	3	MSTRG.5560_chr03_+, STRG.226_chr01_-, STRG.27539_chr04_+
Tamaricaceae	Tamarix chinensis	3	TC02G2530, TC03G1096, TC10G2296