Basic Information
Locus ID:
Ag4G01465
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 197472140 | 197484515 | + | Ag4G01465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 38,731.58 Da | 35.36 | 74.99 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 13 | 346 | 3.38527E-68 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 240 | 9.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 190 | 3.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 145 | 2.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 72 | 101 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 14 | 54 | 6.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 314 | 346 | 1.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 346 | 6.6E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 40 | 351 | 1.6E-104 | IPR015943 |
| SMART | SM00320 | WD40_4 | 107 | 146 | 1.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 9.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 10 | 55 | 9.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 241 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 62 | 102 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 346 | 1.3E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 240 | 10.996502 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 147 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 351 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 17 | 55 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 240 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 70 | 101 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 351 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 55 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 147 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 190 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 190 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 70 | 101 | 9.572873 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 133 | 147 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 42 | 56 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 333 | 347 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 228 | 242 | 1.7E-6 | IPR020472 |
| Hamap | MF_03037 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. | 9 | 349 | 28.982946 | IPR028608 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26060.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017242793.1 | PREDICTED: protein CIA1-like [Daucus carota subsp. sativus] | 0 |
| O80990 | Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A834SIQ6 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Senna tora OX=362788 GN=G2W53_043408 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.99894 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.186264 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.046055 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.972178 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.03614 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.949989 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.033634 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.217255 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.996458 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.739616 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.880589 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.535063 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.222481 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.678652 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.269382 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 25.97508 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 26.346722 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.202686 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.848831 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.893232 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.273438 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.01709 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.391703 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.673256 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.554991 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.372591 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.108749 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.428337 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.092369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 25.380575 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 24.168365 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.181784 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 38.887424 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.133011 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 43.399185 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 37.211815 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 23.798519 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 30.063276 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.417747 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.537908 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.899079 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.538778 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.862148 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 29.803068 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.11437 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.966124 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.589424 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.500244 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.838203 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.107958 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11623, jg31955, jg32687 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2391, Sbi_jg34126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2382 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012546 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78109, Sgl80615 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016841, gene:ENSEOMG00000039732 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0001770, CQ.Regalona.r1.9BG0020590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30275530 |
| Apiaceae | Apium graveolens | 5 | Ag10G02042, Ag10G02043, Ag10G02044, Ag10G02045, Ag4G01465 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016520, scaffold004131G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103718010, gene-LOC103720025, gene-LOC120109818 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.642.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G11511, Ftri15G15672 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26060.1, AT4G32990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002028m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g05920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g024580.2N, BniB07g008040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0668 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0764 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0060s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2065 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037624 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09702, Lb2G09703, Lb5G28991, Lb5G28992 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.724, BH03.857, CH03.2, CH03.954 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0561970, gene-QOZ80_7BG0595540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042018 |
| Poaceae | Oryza coarctata | 2 | Oco13G004560, Oco14G005360 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g14830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G112300 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G015590, Chr24G004550, Chr24G012880, Chr27G000550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G751700, Tel7E01G751900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG061960, gene_TRIDC7BG055270 |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G446400.2, TraesCS7A02G446500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb304430_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51868, nbis-gene-58360 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4981 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.241, evm.TU.LG06.1038, evm.TU.LG11.487 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g22260, gene.Posoc10g01020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.771 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17657 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13603 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17111 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.14 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012285 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15864 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8986 |
| Salicaceae | Populus euphratica | 2 | populus_peu02424, populus_peu02430 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132600334, gene-LOC132629872, gene-LOC132633644 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI004661900, SOLCI007330400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107030781, gene-LOC107031510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12315 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0827 |
| Zosteraceae | Zostera marina | 1 | Zosma04g24200.v3.1 |