Basic Information
Locus ID:
Ag4G01412
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 186364889 | 186368193 | - | Ag4G01412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 49,543.12 Da | 51.67 | 96.68 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 281 | 384 | 5.8E-7 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 47 | 175 | 1.3E-22 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 39 | 176 | 2.49E-20 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 235 | 402 | 1.11E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 247 | 401 | 1.0E-8 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 22 | 176 | 2.3E-19 | IPR036378 |
| SMART | SM00554 | fasc_3 | 74 | 176 | 1.6E-14 | IPR000782 |
| SMART | SM00554 | fasc_3 | 297 | 402 | 4.4E-13 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 256 | 384 | 10.841347 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 35 | 173 | 18.27828 | IPR000782 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06390.1 | FASCICLIN-like arabinogalactan protein 17 precursor. | 0 |
| RefSeq | XP_017242944.1 | PREDICTED: fasciclin-like arabinogalactan protein 15 [Daucus carota subsp. sativus] | 0 |
| Q66GR0 | Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana OX=3702 GN=FLA17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165ZR13 | Fasciclin-like arabinogalactan protein 16 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009074 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.560323 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.694192 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.752985 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.267575 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.325548 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.795535 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.631611 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.328591 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.185562 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.979006 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.883476 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.487511 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.201395 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.358637 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 259.615723 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 177.415756 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 123.269218 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 61.9809 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 62.602211 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 60.284389 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 54.561565 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 46.726715 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 44.836342 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.840729 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 38.293434 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 51.318302 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 33.21965 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 45.069801 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 60.027542 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.56441 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.755802 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.956644 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.180553 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.554708 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.01994 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.003092 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.171233 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.227328 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.12694 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.015444 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.899275 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.172462 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.898022 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.153141 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 44.666195 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.802654 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 121.408875 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.710408 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.390478 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.499537 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15174, jg31891, jg32748, jg3687 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2323, gene_5740 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003061, Ah027755 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g108940, BVRB_7g171400 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1463, Sbi_jg15797, Sbi_jg35099, Sbi_jg56574 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13794, Seu_jg3276 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001886, GOSA_00003443 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51350, Sgl56597, Sgl72704, Sgl76243 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008555, gene:ENSEOMG00000023944 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0011450, CQ.Regalona.r1.7AG0005230 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055530, pistato.v30276970 |
| Apiaceae | Apium graveolens | 3 | Ag10G02113, Ag3G00685, Ag4G01412 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000120, scaffold001753G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707446, gene-LOC103713515, gene-LOC103717029 |
| Asteraceae | Flaveria trinervia | 5 | Ftri11G20949, Ftri17G00047, Ftri18G23726, Ftri6G00861 ... |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G35860.1, AT3G11700.1, AT3G52370.1, AT5G06390.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10010381m.g.v1.0, Thhalv10013481m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g09930.v2.2, Sp4g18120.v2.2, Sp5g09920.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB01g008590.2N, BniB01g053310.2N, BniB02g054410.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G1251, Ceq05G1534, Ceq08G1616 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G1412, Cgl05G1533, Cgl08G1655 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g00120, gene.Cymno06g14090 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4076 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1873, evm.TU.LG02.1386 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003628 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19287, Lb3G20265 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.456, CH03.433 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213240, gene-QOZ80_3BG0258380 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0152530.1, HORVU.MOREX.r3.5HG0517170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042577, gene-QYE76_061396 |
| Poaceae | Oryza coarctata | 6 | Oco05G025600, Oco05G025620, Oco06G026450, Oco06G026460 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g57460.1, LOC_Os03g57490.1, LOC_Os07g06680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G056000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105297, Pt_Chr0105317, Pt_Chr0303558, Pt_Chr0303564 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G003230, Chr04G030190, Chr07G029260, Chr12G035130 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G459100, Tel5E01G668300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG033630, gene_TRIDC2BG039050 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G248800.1, TraesCS2B02G263900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb020270_P001, Zm00001eb060130_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15297, nbis-gene-16424, nbis-gene-19598 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g25913, Zma_g2609, Zma_g327, Zma_g4762 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.1803, evm.TU.LG04.2749, evm.TU.LG08.409 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00290 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1311, evm.TU.Scaffold_2_RagTag.1080 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6286 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14678, nbisL1-mrna-18144 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10180, nbisL1-mrna-4131 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.599, evm.TU.utg000016l.384 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005439, Maker00017332 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12509, nbisL1-mrna-7554 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13489, nbisL1-mrna-5677 |
| Salicaceae | Populus euphratica | 4 | populus_peu06021, populus_peu12383, populus_peu19902 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607244, gene-LOC132625950 |
| Solanaceae | Solanum chilense | 2 | SOLCI001892800, SOLCI005759900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002498, gene-LOC107006882 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.9476_chr03_+, gene_13232, gene_6429 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1135, TC05G2722, TC11G1288 |
| Zosteraceae | Zostera marina | 2 | Zosma05g33200.v3.1, Zosma06g30570.v3.1 |