Basic Information
Locus ID:
Ag4G01407
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cyclin-dependent kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 184820160 | 184822090 | - | Ag4G01407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 55,513.73 Da | 44.81 | 77.53 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 221 | 480 | 3.3E-70 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 214 | 486 | 2.02E-92 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 306 | 489 | 4.1E-64 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 205 | 304 | 6.5E-29 | - |
| SMART | SM00220 | serkin_6 | 221 | 480 | 3.6E-94 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 221 | 480 | 44.852142 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 227 | 250 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 343 | 355 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 162 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017242517.1 | PREDICTED: cyclin-dependent kinase G-2-like [Daucus carota subsp. sativus] | 0 |
| A2XUW1 | Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica OX=39946 GN=CDKG-2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A165ZQU2 | cyclin-dependent kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009069 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.012362 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.146145 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.753937 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.703181 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.056183 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.173708 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.281503 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.105992 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.077903 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.774863 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.084038 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.363243 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.811162 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.012238 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.294127 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.990582 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.526773 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.006845 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.163384 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.584484 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.57472 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.404022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.66552 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.169003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.650274 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.870373 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.037586 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.444387 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.322793 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.671408 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.934028 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.226598 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.144072 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.716075 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.288119 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.365963 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.338569 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.562101 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.216166 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.163205 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.620186 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.28851 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.338554 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.853793 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.273427 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.500262 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.413874 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.804257 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.197777 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.967593 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34538, jg6974, jg9566 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14028, gene_3533 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah001971, Ah005524, Ah013849, Ah013898 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_4g078040, BVRB_5g110640, BVRB_6g151410 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg32561, Sbi_jg32562, Sbi_jg32568, Sbi_jg32570 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11202, Seu_jg7525 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002599, GOSA_00017220 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35072, Sgl40457, Sgl53233, Sgl58495 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000000231, gene:ENSEOMG00000005153 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.4AG0006190, CQ.Regalona.r1.4BG0006340 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30140920, pistato.v30141430, pistato.v30223570 ... |
| Apiaceae | Apium graveolens | 9 | Ag10G01211, Ag10G01214, Ag10G01215, Ag4G01407, Ag5G01941 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G013000, scaffold009612G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714762, gene-LOC103719868 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2001.V1.1, AsparagusV1_09.618.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri18G11566, Ftri1G29156, Ftri8G32205, Ftri9G14122 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67580.1, AT5G63370.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003850m.g.v1.0, Thhalv10010233m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g26460.v2.2, Sp5g13470.v2.2, Sp5g22600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g044790.2N, BniB04g001940.2N, BniB06g023760.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1697, Ceq07G1265 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1880, Cgl07G1340 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g08230, gene.Cymno08g04980 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0007s00016.v1.0, Dusal.0069s00015.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g15480, gene.Thate06g10700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11507, nbisL1-mrna-5586 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.724, evm.TU.LG10.1042 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022226, Pov_00033718 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G38404, Lb1G07775 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.2501, AH09.1383, BH07.2308, BH09.1566, CH07.2384 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0136530, gene-QOZ80_2BG0192090 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0177110.1, HORVU.MOREX.r3.6HG0592200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023499, gene-QYE76_044781 |
| Poaceae | Oryza coarctata | 4 | Oco03G014550, Oco04G015010, Oco07G009170, Oco08G009030 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g39010.1, LOC_Os04g41100.4 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G161900, gene-BS78_06G142200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204505, Pt_Chr0302306, Pt_Chr0307200 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G007850, Chr09G012370, Chr13G008300, Chr15G009510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G602800, Tel6E01G416500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG050100, gene_TRIDC6AG033190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G346500.1, TraesCS2B02G364800.5 ... |
| Poaceae | Zea mays | 3 | Zm00001eb078950_P001, Zm00001eb246420_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18605, nbis-gene-7336 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16630, Zma_g21507 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2822, evm.TU.LG03.1350, evm.TU.LG12.407 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g14870 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60456.9, evm.TU.Scaffold_11_RagTag.1539 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12303, nbisL1-mrna-23207, nbisL1-mrna-27035 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11349, nbisL1-mrna-20628, nbisL1-mrna-9309 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-12686, nbisL1-mrna-14663, nbisL1-mrna-15556 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000001l.467, evm.TU.utg000010l.187 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002422, Maker00006734, Maker00008894 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11190, nbisL1-mrna-676, nbisL1-mrna-7001 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15962, nbisL1-mrna-17678, nbisL1-mrna-8763 |
| Salicaceae | Populus euphratica | 6 | populus_peu07639, populus_peu21674, populus_peu21675 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616392, gene-LOC132641251 |
| Solanaceae | Solanum chilense | 1 | SOLCI001817000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020261 |
| Tamaricaceae | Reaumuria soongarica | 4 | STRG.19733_chr07_+, STRG.5114_chr03_-, gene_11160, gene_6666 |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G0731, TC08G2600, TC09G0870 |
| Zosteraceae | Zostera marina | 1 | Zosma05g07210.v3.1 |