Basic Information
Locus ID:
Ag4G01364
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA mismatch repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 173688950 | 173702651 | - | Ag4G01364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 147,268.06 Da | 42.57 | 81.18 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08676 | MutL C terminal dimerisation domain | 1097 | 1250 | 1.2E-8 | IPR014790 |
| Pfam | PF01119 | DNA mismatch repair protein, C-terminal domain | 227 | 349 | 2.1E-8 | IPR013507 |
| Pfam | PF13589 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 27 | 120 | 3.9E-9 | - |
| SUPERFAMILY | SSF118116 | DNA mismatch repair protein MutL | 1097 | 1281 | 2.75E-14 | IPR037198 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 23 | 203 | 2.23E-32 | IPR036890 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 201 | 351 | 2.81E-12 | IPR020568 |
| Gene3D | G3DSA:3.30.1540.20 | - | 1230 | 1293 | 4.2E-8 | IPR042120 |
| Gene3D | G3DSA:3.30.1540.20 | - | 1094 | 1179 | 2.2E-10 | IPR042120 |
| Gene3D | G3DSA:3.30.230.10 | - | 223 | 354 | 3.2E-20 | IPR014721 |
| Gene3D | G3DSA:3.30.565.10 | - | 5 | 206 | 1.1E-50 | IPR036890 |
| SMART | SM01340 | DNA_mis_repair_2 | 216 | 351 | 2.4E-7 | IPR013507 |
| SMART | SM00853 | MutL_C_2 | 1098 | 1250 | 9.3E-18 | IPR014790 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35520.2 | - | 0 |
| RefSeq | XP_017252888.1 | PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4JN26 | DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana OX=3702 GN=MLH3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161YJH4 | MutL_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016694 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.069168 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.703222 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.739448 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.84415 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.342167 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.323062 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.524446 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.421852 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.306219 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.143314 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.003103 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.84379 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.073057 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.522796 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.92893 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.044404 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.327143 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.717914 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.1626 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.847147 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.702738 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.959885 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.775655 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.890016 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.264966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.039857 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.554352 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.633883 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.324699 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.708738 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.208688 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.733568 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.262617 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.478764 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.449812 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.581423 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.101199 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.777683 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.637402 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.757516 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.839935 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.796716 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.728776 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.830903 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.176919 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.118353 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.544192 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.445925 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.857219 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.834129 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13363 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027286 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g135740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12660, Sbi_jg53264 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8644 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010367, GOSA_00010370 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33601, Sgl38904, Sgl39152 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000229, gene:ENSEOMG00000001192 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0025130 |
| Apiaceae | Apium graveolens | 1 | Ag4G01364 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723997 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2330.V1.1, AsparagusV1_07.2332.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G04508 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024245m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33300.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g087580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0048 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0048 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g00100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6932 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.105, evm.TU.LG02.2882 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002291 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06053 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2854, BH03.3021, CH03.3210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0503940.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007153, gene-QYE76_007154 |
| Poaceae | Oryza coarctata | 2 | Oco17G011340, Oco18G011230 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g33250.1, LOC_Os09g37930.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G083600, gene-BS78_02G266400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700777, Pt_Chr0700856 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G006660, Chr11G012670 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG055760 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G352800.1, TraesCS5B02G355000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb104330_P001, Zm00001eb104340_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52805 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29931 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG06.952, evm.TU.LG11.305, evm.TU.LG11.307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.23 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-127, nbisL1-mrna-162 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5907, nbisL1-mrna-5961 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5837 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1200 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006813 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6609 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2492 |
| Salicaceae | Populus euphratica | 2 | populus_peu14034, populus_peu14035 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621723 |
| Solanaceae | Solanum chilense | 7 | SOLCI000312100, SOLCI000501000, SOLCI001636400 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009320, gene-LOC107010216 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25133_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0836 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11810.v3.1 |