Basic Information
Locus ID:
Ag4G01305
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
TSL-kinase interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 158126884 | 158131803 | - | Ag4G01305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 39,589.24 Da | 47.88 | 79.75 | -0.39 |
Protein Domain:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39380.1 | 0 | |
| RefSeq | XP_017249744.1 | PREDICTED: TSL-kinase interacting protein 1 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164XP87 | TSL-kinase interacting protein 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016671 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.414169 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.713857 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.78464 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.664938 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.465928 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.293245 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.873076 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.152228 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.388302 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.277 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.984818 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.862368 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.766496 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.728778 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.781452 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.852532 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.878276 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.120178 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.064356 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.719658 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.188155 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.090743 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.700653 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.815248 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.612086 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.295745 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.627273 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.229114 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.368161 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.570136 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.487151 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.08543 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.112957 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.953604 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.688031 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.813074 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.855099 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.032058 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.764201 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.287169 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.896161 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.760618 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.854205 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.740685 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.552031 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.776238 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.464928 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.307276 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.565445 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.805601 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16966, jg39449 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8211 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027170 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12549, Sbi_jg53386 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8545 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022990 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33706, Sgl39017 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002293, gene:ENSEOMG00000003245 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022760, CQ.Regalona.r1.6BG0024040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30043970 |
| Apiaceae | Apium graveolens | 1 | Ag4G01305 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000450, COCNU_15G004740 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704772, gene-LOC103710821 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.791.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G02973 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G39380.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024889m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36480.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1847 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1911 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g00700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g13710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10183, nbisL1-mrna-2312 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.782 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014410 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G36809, Lb1G00865, Lb1G06101, Lb8G36394, Lb8G36656 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.398, BH02.426, CH02.469 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0012280, gene-QOZ80_1BG0060950 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0238350.1, HORVU.MOREX.r3.7HG0636590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050325 |
| Poaceae | Oryza coarctata | 4 | Oco01G003480, Oco02G003510, Oco13G013640, Oco14G014420 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g08680.2, LOC_Os07g44030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G039000, gene-BS78_05G057400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200141 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G005830, Chr05G011210, Chr08G006270, Chr0G004580 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G200400, Tel7E01G045500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG014490, gene_TRIDC3BG019010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G116900.2, TraesCS3B02G135900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb122120_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7743 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.325, evm.TU.LG15.632 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g11230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1609 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17576 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3036 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12171 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.965 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008108 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15078 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4471 |
| Salicaceae | Populus euphratica | 3 | populus_peu13882, populus_peu23050, populus_peu23061 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614363 |
| Solanaceae | Solanum chilense | 1 | SOLCI002675300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015961 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.4338_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0353 |
| Zosteraceae | Zostera marina | 1 | Zosma05g14400.v3.1 |