Basic Information
Locus ID:
Ag4G01302
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
phagosome-lysosome fusion involved in apoptotic cell clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 157024700 | 157057388 | + | Ag4G01302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 358,638.78 Da | 46.95 | 94.99 | -0.11 |
Protein Domain:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39420.2 | 0 | |
| RefSeq | XP_017252052.1 | PREDICTED: uncharacterized protein LOC108222676 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161YJF8 | Spatacsin_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016674 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.593386 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.173061 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.103834 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.208819 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.074042 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.754559 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.355065 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.331771 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.17568 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.41467 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.883468 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.216019 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.013648 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.066898 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.159671 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.333764 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.225687 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.487963 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.596281 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.300198 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.599324 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.859825 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.110763 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.055188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.81325 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.623086 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.054518 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.578196 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.978248 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.045921 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.067779 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.240923 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.367983 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.258173 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.885313 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.853957 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.127653 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.318554 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.326298 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.622983 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.245191 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.418932 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.562618 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.057063 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.662123 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.513113 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.915118 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.835704 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.333646 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.804516 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13282 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027145 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133220 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13381, Sbi_jg52465 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9375 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013392 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl34136, Sgl34369, Sgl34370, Sgl39771 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000346, gene:ENSEOMG00000001052 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30043900 |
| Apiaceae | Apium graveolens | 1 | Ag4G01302 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G000400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704848 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2232.V1.1, AsparagusV1_01.2233.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G05071 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G39420.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024179m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36440.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g000500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1841 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1905 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g11800 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6748 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.775 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014415 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G27745, Lb5G27747, Lb5G27748 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.1168, CH01.2653, CH05.1543 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0238190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050304 |
| Poaceae | Oryza coarctata | 2 | Oco01G003510, Oco02G003550 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08750.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G254700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200132, Pt_Chr0200136 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G005870, Chr08G006300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G199400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG014370, gene_TRIDC3BG018860 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G116000.1, TraesCS3B02G135100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb062420_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13242 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7749 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.342, evm.TU.LG15.606 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g15160 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.964, evm.TU.Scaffold_3_RagTag.965 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1081 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16396 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2265 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.647 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002043 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5106 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1682 |
| Salicaceae | Populus euphratica | 4 | populus_peu13874, populus_peu13875, populus_peu37073 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614818 |
| Solanaceae | Solanum chilense | 1 | SOLCI001314600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017581 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2749 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0331 |
| Zosteraceae | Zostera marina | 1 | Zosma01g22690.v3.1 |