Basic Information
Locus ID:
Ag4G01296
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
chromatin organization
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 154769487 | 154783229 | - | Ag4G01296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 79,861.43 Da | 47.70 | 71.38 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08729 | HPC2 and ubinuclein domain | 113 | 161 | 1.3E-12 | IPR014840 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 84 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21610.1 | wound-responsive family protein. | 0 |
| RefSeq | XP_017254073.1 | PREDICTED: ubinuclein-1-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8RX78 | Ubinuclein-1 OS=Arabidopsis thaliana OX=3702 GN=UBN1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164XNU5 | HUN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016656 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.259298 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.153742 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.917343 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.089729 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.037397 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.59383 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.815866 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.890848 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.194649 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.977043 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.546623 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.659595 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.495945 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.622343 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.650373 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.901193 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.1398 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.736367 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.404035 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.85516 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.74222 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.692358 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.817396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.984208 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.501827 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.937368 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.111784 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.060606 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.668821 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.467632 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.753365 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.678381 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.811925 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.276937 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.158037 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.405356 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.991802 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.942591 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.837395 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.900038 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.450996 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 30.960741 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.5935 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 40.884953 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.022503 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.541264 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 32.222115 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.239861 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.26956 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.794859 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12057, jg23142 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22960, gene_4202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024127 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g010120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2689, Sbi_jg28342 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7133 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020174 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11671, Sgl17171 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014315, gene:ENSEOMG00000016062 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0012900, CQ.Regalona.r1.1BG0013070 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30039160, pistato.v30201780 |
| Apiaceae | Apium graveolens | 2 | Ag3G01843, Ag4G01296 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G020320, scaffold036470G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702606, gene-LOC103718710 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2938.V1.1, AsparagusV1_10.891.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G13038 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21610.3, AT1G77310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018217m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19140.v2.2, Sp5g32490.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g056450.2N, BniB05g073570.2N, BniB06g049620.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1873 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2013 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g08860, gene.Cymno08g04010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g09780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12297, nbisL1-mrna-5254 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.904, evm.TU.LG06.832 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021690 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38293, Lb4G21569, Lb6G30847 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4098, BH02.4110, CH02.4141 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0092040 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0065090.2, HORVU.MOREX.r3.3HG0307140.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013165, gene-QYE76_056935, gene-QYE76_056969 |
| Poaceae | Oryza coarctata | 3 | Oco01G026670, Oco02G027680, Oco10G010100 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66050.1, LOC_Os05g34900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G359100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505049, Pt_Chr0600079 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G021440, Chr05G030280, Chr08G020720 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G435200, Tel3E01G646000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG039450, gene_TRIDC1BG044900 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G264100.1, TraesCS1B02G274800.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb145640_P001, Zm00001eb366130_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11176, nbis-gene-28547 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11676, Zma_g9139 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1544, evm.TU.LG08.1214, evm.TU.LG10.1376 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11270 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.1144, evm.TU.Scaffold_8_RagTag.607 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18704, nbisL1-mrna-9643 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2485, nbisL1-mrna-5555 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13130, nbisL1-mrna-18164 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.407, evm.TU.utg000018l.611 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003638 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2897, nbisL1-mrna-8893 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20430, nbisL1-mrna-24343 |
| Salicaceae | Populus euphratica | 6 | populus_peu13696, populus_peu14778, populus_peu22857 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627158 |
| Solanaceae | Solanum chilense | 1 | SOLCI001590800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003842, gene-LOC107005094 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.25073_chr11_-, gene_15726 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2541, TC09G1993 |
| Zosteraceae | Zostera marina | 3 | Zosma02g06870.v3.1, Zosma04g16010.v3.1, Zosma05g16340.v3.1 |