halophFGD

Basic Information

Locus ID: Ag4G01290

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Tyr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	152991673	153003399	+	Ag4G01290

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.90	70,599.35 Da	46.54	90.39	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00293	USP_Like	105	171	5.68679E-5	-
Pfam	PF00069	Protein kinase domain	334	599	9.5E-42	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	317	603	7.93E-75	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	410	616	7.9E-55	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	306	408	1.9E-32	-
SMART	SM00219	tyrkin_6	333	602	8.1E-15	IPR020635
ProSiteProfiles	PS50011	Protein kinase domain profile.	333	613	36.937103	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	339	361	-	IPR017441
ProSitePatterns	PS00109	Tyrosine protein kinases specific active-site signature.	454	466	-	IPR008266

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G55200.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain.
RefSeq	XP_017227579.1	PREDICTED: serine/threonine-protein kinase CDG1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9LSE1	Serine/threonine-protein kinase CDG1 OS=Arabidopsis thaliana OX=3702 GN=CDG1 PE=1 SV=1
TrEMBL	A0A175YCA2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031504 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.674577	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.39952	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.478597	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.853368	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.007324	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.932891	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.522162	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.219125	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.289526	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.071041	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.934645	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	11.191462	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.840709	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.386575	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.228697	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.133292	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.11029	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.028267	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.778227	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.788176	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.028806	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.104885	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.073353	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.066209	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.050746	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.013754		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.358526		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.733853		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.329644		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.341453		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.207799		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	13.371087		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.551161		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.407588		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.944368	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.969519	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.442093	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.2246	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.210206	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.188327	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.032303	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.03677	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.325476	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.440427	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.074007	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10465, jg10466, jg12028, jg12030
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000032379
Anacardiaceae	Pistacia vera	2	pistato.v30038690, pistato.v30038710
Apiaceae	Apium graveolens	1	Ag4G01290
Arecaceae	Cocos nucifera	2	COCNU_01G020680, COCNU_03G014660
Arecaceae	Phoenix dactylifera	2	gene-LOC103722203, gene-LOC120113028
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2921.V1.1, AsparagusV1_04.2922.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G07857
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G1901
Casuarinaceae	Casuarina glauca	2	Cgl03G2048, Cgl03G2049
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5277
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.794
Plantaginaceae	Plantago ovata	3	Pov_00023063, Pov_00037875, Pov_00037878
Poaceae	Echinochloa crus-galli	5	AH02.4090, AH02.4091, BH02.4102, CH02.4134, CH02.4135
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0042150, gene-QOZ80_1BG0091970
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0307340.1
Poaceae	Lolium multiflorum	2	gene-QYE76_056800, gene-QYE76_056950
Poaceae	Oryza coarctata	2	Oco01G026600, Oco02G027630
Poaceae	Oryza sativa	1	LOC_Os01g65940.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G358300
Poaceae	Sporobolus alterniflorus	2	Chr03G021410, Chr08G020760
Poaceae	Thinopyrum elongatum	1	Tel3E01G648400
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG058050, gene_TRIDC3BG065030
Poaceae	Triticum aestivum	3	TraesCS3A02G407500.2, TraesCS3B02G440700.2 ... TraesCS3D02G402800.1
Poaceae	Zea mays	1	Zm00001eb145720_P002
Poaceae	Zoysia japonica	2	nbis-gene-28552, nbis-gene-55780
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.1169, evm.TU.Scaffold_7_RagTag.1170
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-18670
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19448
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-13155
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000002l.391
Rhizophoraceae	Kandelia obovata	2	Maker00011718, Maker00012037
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-8909
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-18382
Solanaceae	Lycium barbarum	2	gene-LOC132627208, gene-LOC132628899
Solanaceae	Solanum pennellii	1	gene-LOC107017447