halophFGD

Basic Information

Locus ID: Ag4G01242

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	143010424	143017030	-	Ag4G01242

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.28	83,957.16 Da	48.18	77.54	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14131	PKc_Mps1	374	670	2.52014E-159	-
Pfam	PF00069	Protein kinase domain	376	671	5.7E-53	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	370	679	1.89E-60	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	369	455	5.8E-23	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	492	674	1.7E-48	-
SMART	SM00220	serkin_6	376	671	2.4E-68	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	376	671	38.717987	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	382	404	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	525	537	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08866 (serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1])

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G77720.1	putative protein kinase 1. Encodes a predicted protein kinase based on sequence similarity.
RefSeq	XP_017240936.1	PREDICTED: probable serine/threonine-protein kinase mps1 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q84VX4	Serine/threonine-protein kinase MPS1 OS=Arabidopsis thaliana OX=3702 GN=MPS1 PE=2 SV=1
TrEMBL	A0A166HA94	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002660 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.796346	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.196223	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.484745	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.068873	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.981253	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.003627	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.369741	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.958751	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	8.704537	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.930429	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.63035	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.841102	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.97726	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.854659	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.846288	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.532853	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.887991	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.710067	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.044698	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.317005	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.965859	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.758964	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.675367	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.661744	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.954136	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.031559	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.518835	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.525989	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.272588	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.046483		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.292317		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.180385		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.15808		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.467931		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.544004		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.546412		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.916771		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.065804		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.730722	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.916142	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.594202	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.244605	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.419801	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.971674	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.716927	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.610749	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.974514	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.025762	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.7331	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.567702	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg12135, jg23190
Aizoaceae	Mesembryanthemum crystallinum	1	gene_23394
Amaranthaceae	Atriplex hortensis	1	Ah022586
Amaranthaceae	Beta vulgaris	1	BVRB_1g000250
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg4077, Sbi_jg49718
Amaranthaceae	Salicornia europaea	1	Seu_jg5538
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022029
Amaranthaceae	Suaeda glauca	3	Sgl10474, Sgl15657, Sgl15727
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000013550, gene:ENSEOMG00000036474 ... gene:ENSEOMG00000049776
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0000290, CQ.Regalona.r1.2BG0028680
Anacardiaceae	Pistacia vera	1	pistato.v30040160
Apiaceae	Apium graveolens	1	Ag4G01242
Arecaceae	Cocos nucifera	2	COCNU_02G006630, COCNU_03G007870
Arecaceae	Phoenix dactylifera	2	gene-LOC103701911, gene-LOC103715254
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.1438.V1.1, AsparagusV1_03.1439.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G07254, Ftri9G03026, FtriNA02584, FtriNA21373
Brassicaceae	Arabidopsis thaliana	1	AT1G77720.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018161m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g32890.v2.2
Brassicaceae	Brassica nigra	1	BniB06g049920.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G1873
Casuarinaceae	Casuarina glauca	2	Cgl09G2041, Cgl09G2049
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g01840
Dunaliellaceae	Dunaliella salina	1	Dusal.0006s00049.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g04240
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.957
Plantaginaceae	Plantago ovata	1	Pov_00021733
Plumbaginaceae	Limonium bicolor	2	Lb6G31266, Lb6G31307
Poaceae	Echinochloa crus-galli	4	AH01.904, BH01.1033, CH01.1081, Contig309.116
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0219590, gene-QOZ80_3BG0264810
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0336440.1
Poaceae	Lolium multiflorum	1	gene-QYE76_062788
Poaceae	Oryza coarctata	2	Oco05G021260, Oco06G022080
Poaceae	Oryza sativa	1	LOC_Os03g49750.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G110900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0104789
Poaceae	Sporobolus alterniflorus	3	Chr01G007380, Chr07G025660, Chr12G030090
Poaceae	Thinopyrum elongatum	1	Tel4E01G076600
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG042350, gene_TRIDC4BG006620
Poaceae	Triticum aestivum	3	TraesCS4A02G271800.2, TraesCS4B02G042200.1 ... TraesCS4D02G039400.1
Poaceae	Zea mays	1	Zm00001eb054400_P001
Poaceae	Zoysia japonica	2	nbis-gene-14765, nbis-gene-15869
Poaceae	Zoysia macrostachya	2	Zma_g2985, Zma_g677
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1939, evm.TU.LG06.397
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g31150
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.1062, evm.TU.Scaffold_8_RagTag.673
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-9561
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13960, nbisL1-mrna-525
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-18226, nbisL1-mrna-6885, nbisL1-mrna-6886
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.806, evm.TU.utg000018l.563
Rhizophoraceae	Kandelia obovata	2	Maker00003092, Maker00010620
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-2949, nbisL1-mrna-8168
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-20370, nbisL1-mrna-9879
Salicaceae	Populus euphratica	2	populus_peu14694, populus_peu32367
Solanaceae	Lycium barbarum	1	gene-LOC132627046
Solanaceae	Solanum chilense	1	SOLCI005841700
Solanaceae	Solanum pennellii	1	gene-LOC107003103
Tamaricaceae	Reaumuria soongarica	1	gene_15061
Tamaricaceae	Tamarix chinensis	1	TC09G2482
Zosteraceae	Zostera marina	1	Zosma06g16690.v3.1