Basic Information
Locus ID:
Ag4G01225
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SYMRK
Description:
Nodulation receptor kinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 138309058 | 138315904 | - | Ag4G01225 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 102,828.83 Da | 40.73 | 90.59 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 597 | 864 | 3.02742E-97 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 594 | 863 | 1.1E-44 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 37 | 342 | 6.9E-47 | IPR024788 |
| SUPERFAMILY | SSF52058 | L domain-like | 374 | 485 | 4.08E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 569 | 863 | 7.82E-75 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 182 | 344 | 5.0E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 353 | 499 | 3.2E-25 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 563 | 666 | 5.2E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 667 | 883 | 6.8E-60 | - |
| SMART | SM00220 | serkin_6 | 591 | 868 | 1.1E-22 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 591 | 868 | 36.2304 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 713 | 725 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 899 | 919 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67720.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017237798.1 | PREDICTED: nodulation receptor kinase-like [Daucus carota subsp. sativus] | 0 |
| Q8L4H4 | Nodulation receptor kinase OS=Medicago truncatula OX=3880 GN=NORK PE=1 SV=2 | 0 | |
| TrEMBL | A0A166AVX5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010758 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.052641 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.141935 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.07308 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.140525 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.250137 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.203352 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.143752 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.162193 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.244913 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.188821 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.108039 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.193877 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.388375 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.860133 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.174197 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.041224 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.075302 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.293593 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.065157 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.134641 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.245041 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.131963 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.178462 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.050857 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.002918 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.042112 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.117328 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.229842 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.083494 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.190614 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.081448 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.032879 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.16453 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.422897 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.077177 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.663448 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.296854 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.165263 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.703098 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17317 |
| Apiaceae | Apium graveolens | 3 | Ag4G01225, Ag5G00375, Ag7G00972 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G014740 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714442 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1047.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32454 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0389 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10102 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2655 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030007 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3441, BH03.3596, CH03.3800 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0573170, gene-QOZ80_7BG0604470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0133680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040451, gene-QYE76_040484 |
| Poaceae | Oryza coarctata | 2 | Oco13G010350, Oco14G010990 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g38070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G319400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304399, Pt_Chr0304464 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G010420, Chr19G004110, Chr20G009610, Chr24G010410 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G381300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG025760, gene_TRIDC2BG030300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G200300.1, TraesCS2B02G227700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb324630_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10579, nbis-gene-654 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5375, Zma_g6684 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-828 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1307, nbisL1-mrna-2785 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12038, nbisL1-mrna-2399 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1051, evm.TU.utg000019l.554 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002217 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3356 |
| Salicaceae | Populus euphratica | 1 | populus_peu23775 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623740 |
| Solanaceae | Solanum chilense | 1 | SOLCI000782800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009482 |