halophFGD

Basic Information

Locus ID: Ag4G01188

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	129613636	129617264	-	Ag4G01188

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.17	37,084.28 Da	42.42	73.60	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	70	347	4.3E-74	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	256	347	2.68E-16	-
Gene3D	G3DSA:3.10.20.90	-	256	347	2.7E-33	-
ProSiteProfiles	PS51745	PB1 domain profile.	259	347	23.009068	IPR000270

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G65670.2	indole-3-acetic acid inducible 9. auxin (indole-3-acetic acid) induced gene
RefSeq	XP_017242253.1	PREDICTED: auxin-responsive protein IAA9 [Daucus carota subsp. sativus]
Swiss-Prot	Q38827	Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1
TrEMBL	A0A166AW13	Auxin-responsive protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010763 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	173.976028	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	255.451874	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	162.439331	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	180.704117	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	186.009079	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	74.104179	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	88.931328	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	24.911951	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	157.540466	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	137.977325	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	155.312668	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	183.048141	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	208.626801	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	194.205307	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	117.403595	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	143.085541	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	117.595085	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	162.418396	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	128.750885	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	124.291298	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	129.864502	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	117.591896	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	129.400162	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	115.581696	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	127.511909	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	137.861404	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	160.900879	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	120.922974	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	164.536606	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	26.461872		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	34.68523		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	37.297352		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	41.354408		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	58.798447		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	34.009613		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	36.79298		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	20.42511		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	25.298365		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	73.876953	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	49.450974	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.983667	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.517018	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	48.873341	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	46.944981	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	64.018967	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.030634	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	157.245605	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	95.053162	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	69.238197	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	72.523682	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg18133, jg19602, jg25321, jg30757, jg39876
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10727, gene_21314, gene_23662
Amaranthaceae	Atriplex hortensis	4	Ah002364, Ah010889, Ah012984, Ah014582
Amaranthaceae	Beta vulgaris	3	BVRB_6g152930, BVRB_8g196860, BVRB_9g221270
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11365, Sbi_jg25012, Sbi_jg43022, Sbi_jg45624 ... Sbi_jg46319, Sbi_jg8866
Amaranthaceae	Salicornia europaea	3	Seu_jg11469, Seu_jg19738, Seu_jg20647
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002058, GOSA_00005327, GOSA_00007773
Amaranthaceae	Suaeda glauca	8	Sgl35715, Sgl41030, Sgl42253, Sgl47029, Sgl53416, Sgl55810 ... Sgl58682, Sgl61019
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000001205, gene:ENSEOMG00000008979 ... gene:ENSEOMG00000015656, gene:ENSEOMG00000018667, gene:ENSEOMG00000026643, gene:ENSEOMG00000034305, gene:ENSEOMG00000038377, gene:ENSEOMG00000047145, gene:ENSEOMG00000052437
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.6AG0000240, CQ.Regalona.r1.6BG0000130 ... CQ.Regalona.r1.7BG0011670, CQ.Regalona.r1.8AG0019830, CQ.Regalona.r1.8BG0022560
Anacardiaceae	Pistacia vera	5	pistato.v30042400, pistato.v30124190, pistato.v30124900 ... pistato.v30204260, pistato.v30256820
Apiaceae	Apium graveolens	7	Ag10G01523, Ag4G00154, Ag4G01188, Ag6G01444, Ag8G00230 ... Ag9G01116, AgUnG01323
Arecaceae	Cocos nucifera	4	COCNU_02G003860, COCNU_03G011800, COCNU_14G003610 ... scaffold023260G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103702546, gene-LOC103706840, gene-LOC103709490 ... gene-LOC103716613
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.459.V1.1, AsparagusV1_05.1898.V1.1
Asteraceae	Flaveria trinervia	9	Ftri13G12981, Ftri14G00199, Ftri15G16890, Ftri18G12429 ... Ftri18G24814, Ftri1G31643, Ftri3G11414, Ftri7G05048, Ftri8G12102
Brassicaceae	Arabidopsis thaliana	3	AT2G22670.4, AT4G29080.1, AT5G65670.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000236m.g.v1.0, Thhalv10004532m.g.v1.0 ... Thhalv10025542m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g28750.v2.2, Sp4g01690.v2.2, Sp7g27020.v2.2
Brassicaceae	Brassica nigra	6	BniB01g021330.2N, BniB03g011460.2N, BniB04g000680.2N ... BniB05g008450.2N, BniB06g013950.2N, BniB07g043370.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G1029, Ceq05G0316, Ceq06G0402, Ceq06G1520
Casuarinaceae	Casuarina glauca	4	Cgl03G1114, Cgl05G0335, Cgl06G0417, Cgl06G1578
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12310, gene.Cymno07g05240, gene.Cymno12g02610
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g25200, gene.Thate04g20560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10596, nbisL1-mrna-3239, nbisL1-mrna-4377 ... nbisL1-mrna-768
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.318, evm.TU.LG02.2645, evm.TU.LG06.266
Plantaginaceae	Plantago ovata	2	Pov_00023258, Pov_00025698
Plumbaginaceae	Limonium bicolor	3	Lb1G05999, Lb1G06005, Lb5G26446
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1BG0049300
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0249060.1
Poaceae	Lolium multiflorum	3	gene-QYE76_017236, gene-QYE76_033899, gene-QYE76_051569
Poaceae	Oryza coarctata	2	Oco10G004890, Oco11G009790
Poaceae	Paspalum vaginatum	1	gene-BS78_10G145100
Poaceae	Puccinellia tenuiflora	1	Pt_Ctg00027
Poaceae	Sporobolus alterniflorus	2	Chr14G011510, Chr21G016240
Poaceae	Zea mays	1	Zm00001eb284310_P002
Poaceae	Zoysia japonica	1	nbis-gene-17920
Portulacaceae	Portulaca oleracea	5	evm.TU.LG07.970, evm.TU.LG08.1637, evm.TU.LG12.1720 ... evm.TU.LG15.890, evm.TU.LG22.536
Posidoniaceae	Posidonia oceanica	9	gene.Posoc02g10760, gene.Posoc02g16660, gene.Posoc02g18880 ... gene.Posoc04g09970, gene.Posoc04g09980, gene.Posoc05g19100, gene.Posoc07g11800, gene.Posoc08g13080, gene.Posoc09g07380
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.57324.2, evm.TU.57325.2, evm.TU.Scaffold_7_RagTag.885 ... evm.TU.Scaffold_18_RagTag.557, evm.TU.Scaffold_4_RagTag.1928, evm.TU.Scaffold_6_RagTag.1734, evm.TU.Scaffold_8_RagTag.847
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-19348, nbisL1-mrna-27935, nbisL1-mrna-27953 ... nbisL1-mrna-818, nbisL1-mrna-9390
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-11579, nbisL1-mrna-1309, nbisL1-mrna-16303 ... nbisL1-mrna-17067, nbisL1-mrna-17635, nbisL1-mrna-3484, nbisL1-mrna-6952
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-12033, nbisL1-mrna-20577, nbisL1-mrna-2409 ... nbisL1-mrna-4698, nbisL1-mrna-6714, nbisL1-mrna-7970, nbisL1-mrna-8828
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000002l.682, evm.TU.utg000008l.1101 ... evm.TU.utg000011l.1056, evm.TU.utg000018l.238, evm.TU.utg000019l.547, evm.TU.utg000023l.123, evm.TU.utg000033l.556
Rhizophoraceae	Kandelia obovata	7	Maker00001192, Maker00002346, Maker00002870, Maker00007445 ... Maker00010768, Maker00015163, Maker00019097
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-11484, nbisL1-mrna-13081, nbisL1-mrna-14782 ... nbisL1-mrna-15412, nbisL1-mrna-16404, nbisL1-mrna-6168, nbisL1-mrna-7365
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10133, nbisL1-mrna-1212, nbisL1-mrna-17069 ... nbisL1-mrna-17980, nbisL1-mrna-1848, nbisL1-mrna-21320, nbisL1-mrna-3351
Salicaceae	Populus euphratica	3	populus_peu02716, populus_peu32158, populus_peu33622
Solanaceae	Lycium barbarum	5	gene-LOC132603692, gene-LOC132604040, gene-LOC132627675 ... gene-LOC132633374, gene-LOC132636804
Solanaceae	Solanum chilense	3	SOLCI002323600, SOLCI003422200, SOLCI004345900
Solanaceae	Solanum pennellii	2	gene-LOC107005226, gene-LOC107012302
Tamaricaceae	Reaumuria soongarica	4	STRG.8866_chr03_-, gene_15590, gene_1813, gene_8019
Tamaricaceae	Tamarix chinensis	4	TC04G2788, TC09G0281, TC10G1441, TC11G0618
Zosteraceae	Zostera marina	2	Zosma01g06190.v3.1, Zosma05g13460.v3.1