halophFGD

Basic Information

Locus ID: Ag4G01186

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	129284188	129292339	-	Ag4G01186

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.49	90,721.70 Da	53.51	77.47	-0.68

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00225	Kinesin motor domain	51	348	2.4E-108	IPR001752
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	16	388	4.91E-109	IPR027417
Gene3D	G3DSA:3.40.850.10	Kinesin motor domain	7	355	3.7E-123	IPR036961
SMART	SM00129	kinesin_4	12	356	1.9E-131	IPR001752
ProSiteProfiles	PS50067	Kinesin motor domain profile.	14	348	108.179672	IPR001752
ProSitePatterns	PS00411	Kinesin motor domain signature.	244	255	-	IPR019821
PRINTS	PR00380	Kinesin heavy chain signature	96	117	1.4E-37	IPR001752
PRINTS	PR00380	Kinesin heavy chain signature	298	319	1.4E-37	IPR001752
PRINTS	PR00380	Kinesin heavy chain signature	212	229	1.4E-37	IPR001752
PRINTS	PR00380	Kinesin heavy chain signature	245	263	1.4E-37	IPR001752
MobiDBLite	mobidb-lite	consensus disorder prediction	608	639	-	-
Coils	Coil	Coil	363	390	-	-

Gene Ontology

Biological Process:

GO:0007018 (microtubule-based movement)

Molecular Function:

GO:0003777 (microtubule motor activity) GO:0005524 (ATP binding) GO:0008017 (microtubule binding)

KEGG Pathway

KO Term:

K10401 (kinesin family member 18A)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49650.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein.
RefSeq	XP_017237295.1	PREDICTED: kinesin-like protein KIF19 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SCJ4	Kinesin-like protein KIN-8B OS=Arabidopsis thaliana OX=3702 GN=KIN8B PE=2 SV=1
TrEMBL	A0A166AW47	Kinesin-like protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010765 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	14.03318	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.682411	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.243137	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.369051	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.381804	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.907109	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	13.440895	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	11.169559	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	31.187372	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	31.375929	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	35.852795	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	24.972794	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	26.941481	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	24.332703	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.165621	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.634978	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.097759	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.814793	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.740564	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.170146	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.634502	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.700335	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.720516	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.69558	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.333453	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.882025	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.246449	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.549582	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.447196	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.944213		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.048737		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.729552		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.433283		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.223144		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.443272		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	6.642461		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.274692		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.924044		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.381517	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.861092	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.524295	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	6.637274	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.710924	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.058138	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.883593	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.90356	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	8.285965	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	23.73192	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.303938	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	20.217928	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg19607
Aizoaceae	Mesembryanthemum crystallinum	1	gene_23667
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00010372
Anacardiaceae	Pistacia vera	1	pistato.v30204340
Apiaceae	Apium graveolens	1	Ag4G01186
Arecaceae	Cocos nucifera	1	scaffold012196G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103705708
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.720.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G00939
Brassicaceae	Arabidopsis thaliana	1	AT3G49650.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10010126m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g12430.v2.2
Brassicaceae	Brassica nigra	1	BniB06g010150.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0412
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g14200
Dunaliellaceae	Dunaliella salina	2	Dusal.0104s00013.v1.0, Dusal.0430s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g31680
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.2636
Plantaginaceae	Plantago ovata	1	Pov_00024141
Plumbaginaceae	Limonium bicolor	2	Lb4G24625, Lb8G36215
Poaceae	Echinochloa crus-galli	3	AH01.60, BH01.581, CH01.558
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0513780.1
Poaceae	Oryza coarctata	2	Oco05G024820, Oco06G025740
Poaceae	Oryza sativa	1	LOC_Os03g56260.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G065000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0106938, Pt_Chr0107413
Poaceae	Sporobolus alterniflorus	2	Chr04G029640, Chr07G028720
Poaceae	Thinopyrum elongatum	1	Tel5E01G642900
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG059140, gene_TRIDC5BG063320
Poaceae	Triticum aestivum	3	TraesCS5A02G407400.1, TraesCS5B02G412300.1 ... TraesCS5D02G417300.1
Poaceae	Zea mays	1	Zm00001eb059040_P001
Poaceae	Zoysia japonica	2	nbis-gene-10762, nbis-gene-16328
Poaceae	Zoysia macrostachya	2	Zma_g2672, Zma_g378
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.966, evm.TU.LG15.886
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g26810
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_3_RagTag.1161
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-813
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-17637
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-2414
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000019l.543
Rhizophoraceae	Kandelia obovata	1	Maker00002045
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-6172
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1852, nbisL1-mrna-1853
Solanaceae	Lycium barbarum	1	gene-LOC132621755
Solanaceae	Solanum chilense	1	SOLCI004025100
Solanaceae	Solanum pennellii	1	gene-LOC107011468
Tamaricaceae	Reaumuria soongarica	1	gene_15585
Tamaricaceae	Tamarix chinensis	1	TC09G0296