Basic Information
Locus ID:
Ag4G01185
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 129245590 | 129255334 | - | Ag4G01185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 34,582.63 Da | 29.86 | 85.08 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 20 | 311 | 1.84058E-95 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 180 | 3.7E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 311 | 5.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 223 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 18 | 53 | 4.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 59 | 96 | 5.0E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 138 | 7.7E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 267 | 9.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 311 | 1.3E-98 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 314 | 9.7E-132 | IPR015943 |
| SMART | SM00320 | WD40_4 | 57 | 96 | 3.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 312 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 223 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 138 | 3.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 15 | 54 | 4.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 268 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 180 | 1.5E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 191 | 232 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 277 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 143 | 14.081032 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 148 | 189 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 148 | 184 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 147 | 18.294891 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 22 | 63 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 64 | 105 | 17.526274 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 191 | 228 | 9.625601 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 64 | 101 | 13.105581 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 22 | 54 | 11.312864 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 83 | 97 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 125 | 139 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 255 | 269 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 167 | 181 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 125 | 139 | 3.8E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 167 | 181 | 3.8E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 83 | 97 | 3.8E-9 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49660.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017238211.1 | PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Daucus carota subsp. sativus] | 0 |
| Q54KL5 | WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr5 PE=3 SV=1 | 0 | |
| TrEMBL | A0A068U4X8 | WD_REPEATS_REGION domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00040123001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.496738 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.813875 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.461323 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.45409 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.733374 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.26634 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.214455 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.460203 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.091936 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.319269 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.111853 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.068239 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.181175 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.663506 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.845317 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.53294 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.464632 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.362016 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.512537 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.260702 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.660561 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.937403 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.891308 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.443258 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.169006 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.544578 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.548038 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.076606 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.158079 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.764682 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.036071 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.946737 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.780729 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.94375 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 23.856085 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.383943 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 13.526135 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.584982 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.272736 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.593018 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.149689 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.506557 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.220619 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.419039 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.84314 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.109438 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.509004 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.345743 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.936165 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.660122 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35306, jg39882 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10152, gene_13572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037249 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g074580, BVRB_5g119310 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28415, Seu_jg660 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004978 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24276, Sgl29451, Sgl55025, Sgl80526 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30056180, pistato.v30204350 |
| Apiaceae | Apium graveolens | 2 | Ag10G00729, Ag4G01185 |
| Arecaceae | Cocos nucifera | 6 | COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.719.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G26086, Ftri17G18327 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G49660.1, AT4G02730.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g12420.v2.2, Sp6g02690.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0430 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01100, gene.Cymno06g11640 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g09460, gene.Thate09g06630 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00008045, Pov_00024139, Pov_00033976 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G15846, Lb4G23840, Lb4G23844 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040191, gene-QYE76_040541 |
| Poaceae | Oryza coarctata | 3 | Oco05G022250, Oco06G023140, Oco14G011270 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g51550.2, LOC_Os07g38430.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G097800, gene-BS78_02G322200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304498, Pt_Chr0304575 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G377000, Tel4E01G096100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb055840_P001, Zm00001eb270960_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2906, Zma_g585, Zma_g6694 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1612 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17420, nbisL1-mrna-4886 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11893, nbisL1-mrna-19088 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12028, nbisL1-mrna-9833 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.771, evm.TU.utg000011l.1059 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005699, Maker00008120 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15415, nbisL1-mrna-2488 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3346, nbisL1-mrna-6081 |
| Salicaceae | Populus euphratica | 5 | populus_peu05212, populus_peu09234, populus_peu16798 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610932, gene-LOC132622208 |
| Solanaceae | Solanum chilense | 1 | SOLCI004978600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011469, gene-LOC107031421 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1598, TC02G2983, TC07G2682 |
| Zosteraceae | Zostera marina | 2 | Zosma05g23000.v3.1, Zosma06g02780.v3.1 |