halophFGD

Basic Information

Locus ID: Ag4G01159

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Phytosulfokines

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	126379146	126383911	-	Ag4G01159

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.89	14,180.01 Da	54.18	84.49	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06404	Phytosulfokine precursor protein (PSK)	76	126	2.4E-15	IPR009438

Gene Ontology

Biological Process:

GO:0008283 (cell population proliferation)

Molecular Function:

GO:0008083 (growth factor activity)

Cellular Component:

GO:0005576 (extracellular region)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49780.1	phytosulfokine 4 precursor. Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.
RefSeq	XP_034690018.1	phytosulfokines 3-like [Vitis riparia]
Swiss-Prot	Q9M2Y0	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2
TrEMBL	A0A834FW56	Phytosulfokine OS=Rhododendron simsii OX=118357 GN=RHSIM_RhsimUnG0122800 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.363928	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	43.241859	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	88.622154	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	69.993942	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	66.895042	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	127.5224	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	65.494125	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	46.95491	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	37.655495	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	27.368122	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	23.321003	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	11.226369	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	10.250673	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.293126	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.086593	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	16.989408	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.011765	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	73.826797	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.215347	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	184.359528	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	202.024292	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	25.380587	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	18.279993	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.272799	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	30.785175	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.336275	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.524864	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.529597	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.483716	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	10.807772		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	12.366953		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.218056		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	184.680603		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	113.823975		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	242.02063		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	186.245682		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	28.633762		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	115.169769		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.903031	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	13.958652	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	14.071723	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	67.834824	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	41.542038	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.645973	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	8.576707	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	138.779404	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	10.742333	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	52.93317	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	65.400665	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	50.708355	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg16480, jg17343, jg26300, jg28589, jg30195, jg31974, jg8174 ... jg39917
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14411, gene_21244, gene_21475, gene_24019
Amaranthaceae	Atriplex hortensis	5	Ah011439, Ah027509, Ah030902, Ah036797, Ah039502
Amaranthaceae	Beta vulgaris	3	BVRB_1g014760, BVRB_6g128430, BVRB_7g160220
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg11884, Sbi_jg13205, Sbi_jg27442, Sbi_jg33177 ... Sbi_jg39641, Sbi_jg46821, Sbi_jg52591, Sbi_jg54694
Amaranthaceae	Salicornia europaea	5	Seu_jg14678, Seu_jg21123, Seu_jg27919, Seu_jg7907 ... Seu_jg9206
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005048, GOSA_00010082, GOSA_00012288, GOSA_00013214
Amaranthaceae	Suaeda glauca	10	Sgl12556, Sgl17829, Sgl34565, Sgl39979, Sgl55316, Sgl60572 ... Sgl60663, Sgl71394, Sgl74983, Sgl80245
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002455, gene:ENSEOMG00000028289 ... gene:ENSEOMG00000033950, gene:ENSEOMG00000038678, gene:ENSEOMG00000048031, gene:ENSEOMG00000052607
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0020890, CQ.Regalona.r1.1BG0007320 ... CQ.Regalona.r1.6AG0016160, CQ.Regalona.r1.6AG0026520, CQ.Regalona.r1.7AG0019660, CQ.Regalona.r1.7BG0022300, CQ.Regalona.r1.9AG0010830, CQ.Regalona.r1.9BG0011560
Anacardiaceae	Pistacia vera	1	pistato.v30010920
Apiaceae	Apium graveolens	5	Ag11G04355, Ag3G00067, Ag3G00110, Ag4G01159, Ag6G01297
Arecaceae	Cocos nucifera	4	COCNU_02G009670, COCNU_15G000260, contig69610073G000010 ... scaffold076924G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103712283, gene-LOC103713684, gene-LOC103717692 ... gene-LOC103719854, gene-LOC120112106
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.873.V1.1, AsparagusV1_03.788.V1.1 ... AsparagusV1_07.3060.V1.1
Asteraceae	Flaveria trinervia	8	Ftri13G25154, Ftri14G27430, Ftri16G24836, Ftri17G30563 ... Ftri18G14278, Ftri18G24896, Ftri18G32910, Ftri4G15130
Brassicaceae	Arabidopsis thaliana	7	AT1G13590.1, AT2G22860.1, AT2G22942.1, AT3G44735.1 ... AT3G49780.1, AT4G37720.1, AT5G65870.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10000380m.g.v1.0, Thhalv10000381m.g.v1.0 ... Thhalv10002908m.g.v1.0, Thhalv10005224m.g.v1.0, Thhalv10009205m.g.v1.0, Thhalv10010875m.g.v1.0, Thhalv10015130m.g.v1.0, Thhalv10026843m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g11970.v2.2, Sp2g28960.v2.2, Sp4g01910.v2.2 ... Sp4g01960.v2.2, Sp5g12310.v2.2, Sp5g16440.v2.2, Sp6g39010.v2.2, Sp7g35370.v2.2
Brassicaceae	Brassica nigra	13	BniB01g020970.2N, BniB02g008530.2N, BniB02g019690.2N ... BniB02g056830.2N, BniB02g088760.2N, BniB03g010010.2N, BniB03g014410.2N, BniB04g000590.2N, BniB05g047860.2N, BniB05g051280.2N, BniB06g014170.2N, BniB06g038310.2N, BniB08g063500.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1492, Ceq05G0025, Ceq05G0029, Ceq05G1727, Ceq09G0469
Casuarinaceae	Casuarina glauca	4	Cgl02G1548, Cgl05G0026, Cgl05G1729, Cgl09G0505
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno06g00660, gene.Cymno07g10660, gene.Cymno10g09040
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g16360, gene.Thate02g30960, gene.Thate06g13670 ... gene.Thate08g21300
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-10086, nbisL1-mrna-10116, nbisL1-mrna-10577 ... nbisL1-mrna-5199, nbisL1-mrna-8568
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2130, evm.TU.LG02.2591, evm.TU.LG03.452 ... evm.TU.LG06.313, evm.TU.LG08.631, evm.TU.LG09.759
Plantaginaceae	Plantago ovata	4	Pov_00004911, Pov_00012076, Pov_00015859, Pov_00023754
Plumbaginaceae	Limonium bicolor	5	Lb1G05452, Lb3G16055, Lb3G19955, Lb7G33000, Lb7G33003
Poaceae	Echinochloa crus-galli	18	AH01.4451, AH03.151, AH04.1628, AH04.280, AH05.190, AH05.191 ... BH03.187, BH04.1650, BH04.268, BH05.218, BH05.220, CH01.5061, CH03.242, CH04.1870, CH04.287, CH05.275, CH05.276, Contig192.91
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0239670, gene-QOZ80_3BG0288350 ... gene-QOZ80_5AG0381370, gene-QOZ80_5BG0428420, gene-QOZ80_9AG0674550, gene-QOZ80_9BG0698350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0154460.1, HORVU.MOREX.r3.4HG0394720.1 ... HORVU.MOREX.r3.5HG0459580.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003024, gene-QYE76_003026, gene-QYE76_003158
Poaceae	Oryza coarctata	12	Oco05G007300, Oco05G020090, Oco06G007550, Oco06G020870 ... Oco13G000840, Oco14G000910, Oco20G000080, Oco21G001110, Oco22G001940, Oco22G008400, Oco23G001750, Oco24G001280
Poaceae	Oryza sativa	6	LOC_Os03g12990.1, LOC_Os03g47230.1, LOC_Os07g03200.1 ... LOC_Os11g05190.1, LOC_Os11g35310.1, LOC_Os12g05260.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G430600, gene-BS78_02G022200 ... gene-BS78_05G047600, gene-BS78_05G168100, gene-BS78_08G022900
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0101837, Pt_Chr0101871, Pt_Chr0103118, Pt_Chr0303450 ... Pt_Chr0303469, Pt_Chr0703128, Pt_Chr0703178
Poaceae	Sporobolus alterniflorus	12	Chr01G028430, Chr07G021380, Chr0G005140, Chr12G011030 ... Chr16G009380, Chr17G008420, Chr19G012060, Chr19G018400, Chr24G002000, Chr27G003890, Chr31G000940, Chr31G006750
Poaceae	Thinopyrum elongatum	4	Tel2E01G471400, Tel4E01G204500, Tel4E01G408000 ... Tel5E01G235800
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG038200, gene_TRIDC2BG039990 ... gene_TRIDC4AG009190, gene_TRIDC4AG029860, gene_TRIDC4BG021300, gene_TRIDC4BG041650, gene_TRIDC5AG022970, gene_TRIDC5BG023090
Poaceae	Triticum aestivum	12	TraesCS2A02G267200.1, TraesCS2B02G275300.2 ... TraesCS2D02G256900.1, TraesCS4A02G060600.1, TraesCS4A02G186800.1.cds1, TraesCS4B02G131900.1, TraesCS4B02G236000.1, TraesCS4D02G126700.1, TraesCS4D02G237400.1, TraesCS5A02G130400.1, TraesCS5B02G130300.1, TraesCS5D02G137900.1
Poaceae	Zea mays	7	Zm00001eb114080_P001, Zm00001eb139570_P001 ... Zm00001eb196710_P001, Zm00001eb299250_P001, Zm00001eb399450_P001, Zm00001eb406460_P001, Zm00001eb406480_P002
Poaceae	Zoysia japonica	8	nbis-gene-2403, nbis-gene-25654, nbis-gene-27048 ... nbis-gene-35841, nbis-gene-4003, nbis-gene-44240, nbis-gene-45766, nbis-gene-46367
Poaceae	Zoysia macrostachya	9	Zma_g1728, Zma_g17562, Zma_g18070, Zma_g18411, Zma_g18965 ... Zma_g24731, Zma_g25494, Zma_g4107, Zma_g5915
Portulacaceae	Portulaca oleracea	5	evm.TU.LG05.63, evm.TU.LG08.1025, evm.TU.LG11.1173 ... evm.TU.LG22.758, evm.TU.LG25.1271
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g27770, gene.Posoc03g27780, gene.Posoc03g27800
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.1999, evm.TU.Scaffold_3_RagTag.1184 ... evm.TU.Scaffold_6_RagTag.1767, evm.TU.Scaffold_7_RagTag.837
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-17391, nbisL1-mrna-19292, nbisL1-mrna-5809 ... nbisL1-mrna-6140
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3079, nbisL1-mrna-9420, nbisL1-mrna-9763
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11997, nbisL1-mrna-22087, nbisL1-mrna-3524 ... nbisL1-mrna-6670
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.647, evm.TU.utg000011l.1074 ... evm.TU.utg000015l.249, evm.TU.utg000016l.265, evm.TU.utg000016l.477
Rhizophoraceae	Kandelia obovata	4	Maker00010342, Maker00015258, Maker00016394, Maker00016862
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-15431, nbisL1-mrna-4152, nbisL1-mrna-4154 ... nbisL1-mrna-7651
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10089, nbisL1-mrna-13943, nbisL1-mrna-1879 ... nbisL1-mrna-22162, nbisL1-mrna-22165, nbisL1-mrna-3318, nbisL1-mrna-434
Salicaceae	Populus euphratica	6	populus_peu08563, populus_peu20929, populus_peu23755 ... populus_peu32081, populus_peu36190, populus_peu36772
Solanaceae	Lycium barbarum	10	gene-LOC132599475, gene-LOC132600211, gene-LOC132604365 ... gene-LOC132604417, gene-LOC132605422, gene-LOC132622813, gene-LOC132623183, gene-LOC132623245, gene-LOC132623608, gene-LOC132633650
Solanaceae	Solanum chilense	9	SOLCI001085000, SOLCI001085100, SOLCI001117400 ... SOLCI003780100, SOLCI004140600, SOLCI005923200, SOLCI005998300, SOLCI006144100, SOLCI007079400
Solanaceae	Solanum pennellii	7	gene-LOC107001773, gene-LOC107004279, gene-LOC107009364 ... gene-LOC107010667, gene-LOC107017382, gene-LOC107022546, gene-LOC107030554
Tamaricaceae	Reaumuria soongarica	3	gene_1787, gene_8379, gene_8607
Zosteraceae	Zostera marina	1	Zosma06g01810.v3.1