Basic Information
Locus ID:
Ag4G01152
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the GRAS family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 125194690 | 125196910 | + | Ag4G01152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 58,804.93 Da | 49.04 | 72.15 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03514 | GRAS domain family | 144 | 521 | 1.0E-106 | IPR005202 |
| ProSiteProfiles | PS50985 | GRAS family profile. | 133 | 521 | 71.993813 | IPR005202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 37 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37650.1 | GRAS family transcription factor. Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. | 0 |
| RefSeq | XP_017237734.1 | PREDICTED: protein SHORT-ROOT [Daucus carota subsp. sativus] | 0 |
| Q9SZF7 | Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1 | 0 | |
| TrEMBL | A0A166AXH4 | GRAS domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010820 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.740966 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.60715 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.693223 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.754373 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.699762 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.231428 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.648269 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.906505 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.639465 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.708668 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.427082 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.135235 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.198956 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.469206 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.694872 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.779401 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.06854 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.506408 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.357807 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.043807 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.026163 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 42.748314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.39138 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 41.309246 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 34.86694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.355391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.731656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.980163 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.783504 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.879672 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.17773 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.267492 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.090913 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.598639 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.094658 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.411889 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.918065 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.758118 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.974869 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.982646 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.375498 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.319448 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.568317 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.965897 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.008572 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.665805 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.125618 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.067108 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.432753 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.186529 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10958, jg17354, jg19633, jg39935 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15822 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah019506, Ah027528 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g057810, BVRB_6g128210 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13178, Sbi_jg52667, Sbi_jg6676 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15259, Seu_jg9185 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01788, Sgl06948, Sgl34590, Sgl40004 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004045, gene:ENSEOMG00000015518 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0010330, CQ.Regalona.r1.3BG0010670 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G02791, Ag4G01152 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G012500, COCNU_05G003700, COCNU_13G007130 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708579, gene-LOC103715985, gene-LOC103716950 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.493.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G17710, Ftri18G33492, Ftri7G17571 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G37650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024885m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g35300.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g088670.2N, BniB03g014380.2N, BniB05g001360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1434 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1435, Cgl09G1035 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01740, gene.Cymno08g02120 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g27640, gene.Thate06g14790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10568, nbisL1-mrna-6669, nbisL1-mrna-7128 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2568, evm.TU.LG11.244 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025164, Pov_00030215 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05466, Lb1G05470 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.2131, BH01.3560, CH01.3773, CH08.1683, CH08.2536 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0229420, gene-QOZ80_3BG0274110 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0130150.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_016854, gene-QYE76_039987, gene-QYE76_040021 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G016750, Oco06G017220, Oco13G011360, Oco14G012120 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g31880.1, LOC_Os07g39820.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G314900, gene-BS78_02G332900 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr04G013830, Chr07G013230, Chr0G020750, Chr19G003220 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G358900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024710, gene_TRIDC2BG028490 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G192600.1.cds1, TraesCS2B02G214600.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb020850_P001, Zm00001eb108090_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32809, nbis-gene-539 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5463, Zma_g6745 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.1440, evm.TU.LG05.78, evm.TU.LG07.1443 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g25800, gene.Posoc05g06110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1202, evm.TU.Scaffold_6_RagTag.1109 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15547, nbisL1-mrna-17373, nbisL1-mrna-764 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19582, nbisL1-mrna-6684 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11982, nbisL1-mrna-2459, nbisL1-mrna-958 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000011l.266, add.evm.TU.utg000011l.440 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002031, Maker00006863, Maker00008307 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19246, nbisL1-mrna-22243, nbisL1-mrna-22972 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1903, nbisL1-mrna-3302, nbisL1-mrna-4141 |
| Salicaceae | Populus euphratica | 3 | populus_peu22571, populus_peu23224, populus_peu23991 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609340, gene-LOC132623383 |
| Solanaceae | Solanum chilense | 2 | SOLCI005473300, SOLCI006362000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008958, gene-LOC107027115 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4486_chr03_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1927 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04030.v3.1 |