Basic Information
Locus ID:
Ag4G01134
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 122228202 | 122233542 | - | Ag4G01134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 89,038.26 Da | 48.61 | 84.11 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52058 | L domain-like | 64 | 207 | 5.92E-7 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 451 | 722 | 3.95E-31 | IPR036322 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 87 | 238 | 2.2E-6 | IPR032675 |
| Gene3D | G3DSA:2.130.10.10 | - | 452 | 741 | 2.6E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 581 | 622 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 482 | 76.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 627 | 665 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 527 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 543 | 578 | 290.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 589 | 624 | 10.074014 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34280.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017242817.1 | PREDICTED: uncharacterized protein LOC108215019 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8GYY7 | Protein DWD HYPERSENSITIVE TO UV-B 1 OS=Arabidopsis thaliana OX=3702 GN=DHU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XZ69 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010841 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 26.276859 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.129423 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.266519 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.268461 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.032038 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.061374 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.734676 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.169594 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.931783 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.577014 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.275854 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.600965 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.7359 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.713636 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.762713 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.224442 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.312349 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.91442 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.957885 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.693633 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.037614 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.796241 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.310592 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.545125 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.047788 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.845952 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.660094 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.650334 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.593235 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.033525 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.03628 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.40048 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.213638 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.897243 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.459636 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.186703 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.625201 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.6846 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.699963 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.170361 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.906043 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.249346 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.777338 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.39238 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 48.007511 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.555429 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 28.82725 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.522869 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.278502 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.77607 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17383, jg28623, jg39976 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11144, gene_16717 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015913, Ah027590 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13106, Sbi_jg25297, Sbi_jg52743, Sbi_jg9148 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19446, Seu_jg9101 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010151, GOSA_00011200 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl33855, Sgl39228, Sgl42996, Sgl47817, Sgl47818 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000002533, gene:ENSEOMG00000011679 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0025720, CQ.Regalona.r1.6BG0027260 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205430 |
| Apiaceae | Apium graveolens | 2 | Ag4G01134, Ag6G02645 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G002780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1241.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G31372 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024491m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g004000.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1386, Ceq09G0305 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1387, Cgl09G0341 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g05940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g15080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10552 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.565 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012205, Pov_00029138 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1062, evm.TU.LG05.110, evm.TU.LG05.1608 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.386 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4809 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1260 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9766 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.729 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004817 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2535 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6017 |
| Salicaceae | Populus euphratica | 2 | populus_peu23326, populus_peu36253 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598967, gene-LOC132621150 |
| Solanaceae | Solanum chilense | 3 | SOLCI002693900, SOLCI003634800, SOLCI006420300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008517, gene-LOC107011495 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9081 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2064 |