Basic Information
Locus ID:
Ag4G01110
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 119445841 | 119450704 | - | Ag4G01110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 17,954.33 Da | 49.72 | 70.69 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 9 | 153 | 5.44469E-56 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 9 | 151 | 3.7E-44 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 156 | 1.84E-51 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 158 | 2.3E-60 | IPR016135 |
| SMART | SM00212 | ubc_7 | 8 | 158 | 1.2E-64 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 158 | 43.410866 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 83 | 98 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57870.1 | sumo conjugation enzyme 1. Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name. | 0 |
| RefSeq | XP_017242375.1 | PREDICTED: SUMO-conjugating enzyme SCE1 [Daucus carota subsp. sativus] | 0 |
| Q42551 | SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana OX=3702 GN=SCE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UR45 | UBC core domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_13G120200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 84.74807 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 69.320107 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 63.63903 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 63.735092 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 62.77113 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 68.139168 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 60.019321 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 59.641621 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 150.197357 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 148.317276 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 149.069977 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 146.226196 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 132.157623 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 141.317871 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 109.280334 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 101.242477 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 129.606705 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 84.797073 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 87.882896 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 106.886971 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 93.921455 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 217.885056 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 237.984238 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 176.975525 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 161.505127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 106.028236 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 100.763145 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 102.394524 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 107.543144 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 88.329071 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 86.144096 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 72.806213 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 94.761536 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 120.219749 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 104.44593 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 96.921097 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 79.598701 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 92.608635 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 59.296288 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 49.05201 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 38.699963 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 170.077194 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 194.67981 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 187.794495 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 202.076324 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 186.531647 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 214.829895 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 168.124176 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 156.474655 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 178.707565 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11603, jg19671, jg30672, jg40006 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16697, gene_16698 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027413 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127260 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13066, Sbi_jg52820 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9061 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010194 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33907, Sgl39274 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002668, gene:ENSEOMG00000028518 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025330, CQ.Regalona.r1.6BG0026860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044920, pistato.v30205830 |
| Apiaceae | Apium graveolens | 2 | Ag4G01110, Ag5G00297 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G019900, COCNU_07G007810, contig69644838G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702696, gene-LOC103719655, gene-LOC103720898 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2993.V1.1, AsparagusV1_04.2413.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G12998, Ftri18G29250 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G57870.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006281m.g.v1.0, Thhalv10006282m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g01130.v2.2, Sp5g04850.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g055450.2N, BniB06g061590.2N, BniB06g063740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1342 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1348 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0218s00011.v1.0, Dusal.0783s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10050, nbisL1-mrna-1239, nbisL1-mrna-6644 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.400, evm.TU.LG06.401 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00023884, Pov_00029182, Pov_00038191 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G06301, Lb1G06302, Lb3G20814, Lb8G36075, Lb8G36081 |
| Poaceae | Echinochloa crus-galli | 13 | AH01.3087, AH01.5124, AH09.2036, AH09.2037, BH01.3429 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0114990, gene-QOZ80_2BG0168770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0054200.1, HORVU.MOREX.r3.2HG0186230.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007902, gene-QYE76_012240, gene-QYE76_045735 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G001350, Oco06G001310, Oco07G013910, Oco17G000630 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g03130.1, LOC_Os04g49130.1, LOC_Os10g39120.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G302700, gene-BS78_01G500500 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0100580, Pt_Chr0100625, Pt_Chr0703598, Pt_Chr0703599 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr04G005940, Chr06G028780, Chr07G005670, Chr09G003630 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G344400, Tel2E01G678200, Tel4E01G568500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG030250, gene_TRIDC1BG035760 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G199500.1, TraesCS1B02G214400.2 ... |
| Poaceae | Zea mays | 6 | Zm00001eb001680_P001, Zm00001eb022000_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-22645, nbis-gene-3102, nbis-gene-36175 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g12809, Zma_g15591, Zma_g20294, Zma_g2202, Zma_g4549 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.1038, evm.TU.LG05.1586, evm.TU.LG05.543 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04540 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60424.19, evm.TU.Scaffold_3_RagTag.147 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-17292, nbisL1-mrna-19195, nbisL1-mrna-630 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14113, nbisL1-mrna-8427 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11926, nbisL1-mrna-6096 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1130, evm.TU.utg000019l.1016 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008160, Maker00012628 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15487, nbisL1-mrna-6418 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2210, nbisL1-mrna-3242 |
| Salicaceae | Populus euphratica | 2 | populus_peu14416, populus_peu32008 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132604084, gene-LOC132604085, gene-LOC132617189 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000913500, SOLCI001699600, SOLCI001781100 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107007623, gene-LOC107011237, gene-LOC107012122 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.2835_chr03_+, STRG.6486_chr03_-, gene_1749 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1767, TC04G2563 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12070.v3.1 |