Basic Information
Locus ID:
Ag4G01106
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
thiol-dependent ubiquitin-specific protease activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 118210534 | 118212110 | + | Ag4G01106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 11,633.28 Da | 18.67 | 70.91 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 12 | 86 | 5.49E-12 | IPR038765 |
| Gene3D | G3DSA:3.90.70.80 | - | 23 | 93 | 1.5E-16 | - |
| ProSiteProfiles | PS50802 | OTU domain profile. | 38 | 99 | 12.317435 | IPR003323 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67170.1 | SEC-C motif-containing protein / OTU-like cysteine protease family protein. | 0 |
| RefSeq | XP_017237585.1 | PREDICTED: OTU domain-containing protein 3 [Daucus carota subsp. sativus] | 0 |
| F4K3M6 | OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 OS=Arabidopsis thaliana OX=3702 GN=OTU7 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166AYT2 | OTU domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010875 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.893763 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.558187 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.594672 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.883252 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.089776 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.036143 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.946963 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.441595 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.657319 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.953303 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.061072 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.696623 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.103186 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.386713 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.817077 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.977149 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.907376 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.873208 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.717502 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.498986 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.641284 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.896025 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.363941 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.877433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.28293 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.593036 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.836582 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.06997 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.934718 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.095585 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.690317 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.230654 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.632539 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.173029 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.04064 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.530004 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.36027 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.660638 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.499951 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.127401 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.780156 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.110765 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.888531 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.943933 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.310485 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.492377 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.74674 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.607599 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.762811 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.873467 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40012 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23951 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027425 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13047, Sbi_jg52829 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9044 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010204 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33916, Sgl39283, Sgl39302 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001662, gene:ENSEOMG00000027069 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025260, CQ.Regalona.r1.6BG0026780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205880 |
| Apiaceae | Apium graveolens | 1 | Ag4G01106 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706509 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.825.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G28782 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67170.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004429m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g043780.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2140, Ceq05G1337 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G1909, Cgl05G1345, Cgl06G2110 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05340 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0330s00005.v1.0, Dusal.0760s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g28930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2106 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00020261, Pov_00023892, Pov_00023896, Pov_00023898 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36108 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2660, BH09.2887, CH09.3103 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299960, gene-QOZ80_4BG0330720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0212580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047268 |
| Poaceae | Oryza coarctata | 1 | Oco07G018810 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G277900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300250, Pt_Chr0300292 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G001340, Chr26G017940 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G930000, Tel7E01G674200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG076230, gene_TRIDC2BG083410 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G545500.2, TraesCS2B02G576000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23161 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1031, evm.TU.LG05.1584 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.367 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-623, nbisL1-mrna-709 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17757 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6090 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1020 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012886 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6422 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2215 |
| Salicaceae | Populus euphratica | 1 | populus_peu14411 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620443 |
| Solanaceae | Solanum chilense | 1 | SOLCI005502100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015171 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3416 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0262 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18400.v3.1 |