halophFGD

Basic Information

Locus ID: Ag4G01104

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Histone-lysine n-methyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	117983625	117998177	-	Ag4G01104

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.64	105,547.53 Da	53.87	64.68	-0.75

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10519	SET_EZH	793	909	1.03583E-73	-
Pfam	PF18264	CXC domain	731	762	1.1E-7	IPR041355
Pfam	PF00856	SET domain	804	907	1.7E-10	IPR001214
SUPERFAMILY	SSF82199	SET domain	688	913	2.4E-49	-
Gene3D	G3DSA:2.170.270.10	SET domain	693	910	7.8E-66	-
SMART	SM00317	set_7	793	914	3.2E-32	IPR001214
SMART	SM01114	CXC_2	727	764	5.3E-11	IPR033467
ProSiteProfiles	PS51633	CXC domain profile.	679	778	22.770395	IPR026489
ProSiteProfiles	PS51576	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	942	259.260315	IPR025778
ProSiteProfiles	PS50280	SET domain profile.	793	908	13.411763	IPR001214
MobiDBLite	mobidb-lite	consensus disorder prediction	394	418	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	439	460	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	394	525	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	18	34	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	51	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	474	513	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	916	942	-	-
Coils	Coil	Coil	69	89	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Cellular Component:

GO:0031519 (PcG protein complex)

KEGG Pathway

KO Term:

K11430 ([histone H3]-lysine27 N-trimethyltransferase EZH2 [EC:2.1.1.356])

Pathway:

ko00310 (Lysine degradation) map00310 (Lysine degradation)

Reaction:

R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine) R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine) R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine) R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23380.1	SET domain-containing protein. Similar to the product of the Polycomb-group gene Enhancer of zeste. Required for stable repression of AG and AP3. Putative role in cell fate determination. Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant.
RefSeq	XP_017242720.1	PREDICTED: histone-lysine N-methyltransferase CLF [Daucus carota subsp. sativus]
Swiss-Prot	P93831	Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana OX=3702 GN=CLF PE=1 SV=2
TrEMBL	A0A166AYV6	SET domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010878 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.691172	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.644229	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.659694	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.567793	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.210808	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.825305	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.995173	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.938876	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	28.741232	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	24.83029	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	31.084133	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	30.740925	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	27.420843	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.735205	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.50971	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.462667	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	8.188602	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.18187	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.301919	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.831151	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.868552	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.72197	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.963983	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	10.027165	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.62849	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.468434	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.452307	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.278674	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.27212	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.334063		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.990046		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.162659		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.812561		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.778818		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.331852		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.088256		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.770379		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.568931		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.90777	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.513566	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.100756	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.302931	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.10408	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	9.314827	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	8.382571	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.769243	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	8.875067	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.914373	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.83215	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.864183	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35113, jg40015
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15041, gene_19265
Amaranthaceae	Atriplex hortensis	4	Ah000105, Ah004342, Ah005404, Ah005405
Amaranthaceae	Beta vulgaris	2	BVRB_5g106820, BVRB_5g121850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg24543, Sbi_jg31326, Sbi_jg57960, Sbi_jg8391
Amaranthaceae	Salicornia europaea	2	Seu_jg11656, Seu_jg25585
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004473, GOSA_00010875
Amaranthaceae	Suaeda glauca	4	Sgl51274, Sgl54528, Sgl56576, Sgl59869
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000005614, gene:ENSEOMG00000007252 ... gene:ENSEOMG00000021857, gene:ENSEOMG00000021878, gene:ENSEOMG00000023549, gene:ENSEOMG00000024022, gene:ENSEOMG00000024435
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0002010, CQ.Regalona.r1.5AG0027020 ... CQ.Regalona.r1.5BG0002130, CQ.Regalona.r1.5BG0028620
Anacardiaceae	Pistacia vera	2	pistato.v30008100, pistato.v30206130
Apiaceae	Apium graveolens	4	Ag4G01104, Ag5G00291, Ag5G02886, Ag9G02327
Arecaceae	Cocos nucifera	3	COCNU_08G005060, COCNU_11G000180, COCNU_16G004410
Arecaceae	Phoenix dactylifera	3	gene-LOC103696622, gene-LOC103713764, gene-LOC103724029
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.1673.V1.1, AsparagusV1_08.1457.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G00317, Ftri15G03347, Ftri17G16197, Ftri18G17065
Brassicaceae	Arabidopsis thaliana	2	AT2G23380.1, AT4G02020.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000037m.g.v1.0, Thhalv10028423m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02390.v2.2, Sp6g01900.v2.2
Brassicaceae	Brassica nigra	2	BniB01g020410.2N, BniB08g044480.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1333, Ceq06G1050
Casuarinaceae	Casuarina glauca	2	Cgl05G1338, Cgl06G1092
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g06510, gene.Cymno18g03860
Dunaliellaceae	Dunaliella salina	1	Dusal.0011s00040.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09320, gene.Thate05g09090
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2109, evm.TU.LG04.450
Plantaginaceae	Plantago ovata	3	Pov_00024947, Pov_00029191, Pov_00029199
Plumbaginaceae	Limonium bicolor	3	Lb8G36103, Lb8G36104, Lb8G36105
Poaceae	Echinochloa crus-galli	6	AH01.3875, AH06.370, BH01.4213, BH06.488, CH01.4500 ... CH06.489
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0245610, gene-QOZ80_3AG0245620 ... gene-QOZ80_3BG0282500, gene-QOZ80_6AG0510020, gene-QOZ80_6BG0462170
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0382250.1, HORVU.MOREX.r3.7HG0655900.1 ... HORVU.MOREX.r3.7HG0655960.1
Poaceae	Lolium multiflorum	3	gene-QYE76_028415, gene-QYE76_063025, gene-QYE76_068467
Poaceae	Oryza coarctata	3	Oco06G014810, Oco11G007280, Oco12G007370
Poaceae	Oryza sativa	2	LOC_Os03g19480.1, LOC_Os06g16390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G377500, gene-BS78_10G055000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102572, Pt_Chr0105706, Pt_Chr0402067, Pt_Chr0402103
Poaceae	Sporobolus alterniflorus	6	Chr01G032910, Chr04G009580, Chr11G022110, Chr12G006670 ... Chr14G002360, Chr21G001470
Poaceae	Thinopyrum elongatum	3	Tel4E01G329400, Tel7E01G260300, Tel7E01G260700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG017090, gene_TRIDC4BG031660 ... gene_TRIDC7AG014970, gene_TRIDC7AG015060, gene_TRIDC7BG004320
Poaceae	Triticum aestivum	9	TraesCS4A02G121300.4, TraesCS4B02G181400.3 ... TraesCS4D02G184600.3, TraesCS7A02G128300.1, TraesCS7A02G128600.1, TraesCS7B02G028200.2, TraesCS7B02G028500.2, TraesCS7D02G127100.2, TraesCS7D02G127400.1
Poaceae	Zea mays	3	Zm00001eb014730_P001, Zm00001eb271490_P005 ... Zm00001eb396070_P002
Poaceae	Zoysia japonica	2	nbis-gene-3518, nbis-gene-5096
Poaceae	Zoysia macrostachya	2	Zma_g29163, Zma_g3769
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1253, evm.TU.LG09.719, evm.TU.LG10.688 ... evm.TU.LG17.699
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g04650, gene.Posoc07g12580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_6_RagTag.1859, evm.TU.Scaffold_9_RagTag.749
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17281, nbisL1-mrna-21472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20015, nbisL1-mrna-8423
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11917, nbisL1-mrna-18542
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.629, evm.TU.utg000011l.1134
Rhizophoraceae	Kandelia obovata	2	Maker00007791, Maker00009601
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15493, nbisL1-mrna-1612
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3234, nbisL1-mrna-5293
Salicaceae	Populus euphratica	4	populus_peu14405, populus_peu23376, populus_peu27351 ... populus_peu31334
Solanaceae	Lycium barbarum	3	gene-LOC132616927, gene-LOC132623421, gene-LOC132644930
Solanaceae	Solanum chilense	3	SOLCI000735100, SOLCI000869500, SOLCI001076900
Solanaceae	Solanum pennellii	3	gene-LOC107001506, gene-LOC107011481, gene-LOC107014997
Tamaricaceae	Reaumuria soongarica	2	gene_17331, gene_3847
Tamaricaceae	Tamarix chinensis	3	TC04G1756, TC07G1795, TC07G2777
Zosteraceae	Zostera marina	2	Zosma02g18570.v3.1, Zosma05g30470.v3.1