halophFGD

Basic Information

Locus ID: Ag4G01102

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the disease resistance NB-LRR family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	117734535	117736996	-	Ag4G01102

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.60	44,160.38 Da	39.81	114.99	0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14798	RX-CC_like	14	112	1.41702E-11	IPR038005
Pfam	PF18052	Rx N-terminal domain	12	98	3.1E-24	IPR041118
SUPERFAMILY	SSF52058	L domain-like	107	368	5.27E-35	-
Gene3D	G3DSA:1.20.5.4130	-	10	115	2.5E-22	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	288	376	1.6E-11	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	116	282	4.9E-24	IPR032675

KEGG Pathway

KO Term:

K19613 (leucine-rich repeat protein SHOC2)

Pathway:

ko04014 (Ras signaling pathway) map04014 (Ras signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G14470.1	NB-ARC domain-containing disease resistance protein.
RefSeq	XP_017243369.1	PREDICTED: disease resistance protein RGA2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q7XA39	Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=RGA4 PE=2 SV=1
TrEMBL	A0A161WTU0	Disease resistance protein RGA3 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010879 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.256443	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.39964	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.332031	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.306818	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.077981	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.106364	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.105745	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.308819	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.113598	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.104891	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.466528	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.256221	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.677194	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.481467	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.822019	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.533557	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.623466	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.692393	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.453833	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.412407	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.799086	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.167477	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.611787	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.306762	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.541609	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.640606	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.722089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.361083	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.338444	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.111283		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.193401		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.070016		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.027428		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.662317		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.920158		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.902102		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.102044		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.852891		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.103848	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.151865	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.825335	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.013083	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.775945	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.522521	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.230369	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.363285	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.190012	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.227003	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg25372, jg25931, jg5627, jg98
Aizoaceae	Mesembryanthemum crystallinum	1	gene_8179
Amaranthaceae	Atriplex hortensis	5	Ah009863, Ah009889, Ah019076, Ah036058, Ah039075
Amaranthaceae	Beta vulgaris	3	BVRB_2g039430, BVRB_2g042620, BVRB_3g055850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg18650, Sbi_jg43699, Sbi_jg48544, Sbi_jg56270
Amaranthaceae	Salicornia europaea	3	Seu_jg16634, Seu_jg18383, Seu_jg18393
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00001612, GOSA_00012760, GOSA_00020394
Amaranthaceae	Suaeda glauca	5	Sgl45205, Sgl49973, Sgl54057, Sgl59394, Sgl82219
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000008443, gene:ENSEOMG00000021078 ... gene:ENSEOMG00000028941, gene:ENSEOMG00000031977, gene:ENSEOMG00000040147
Amaranthaceae	Chenopodium quinoa	13	CQ.Regalona.r1.2AG0011790, CQ.Regalona.r1.2AG0017450 ... CQ.Regalona.r1.2BG0005740, CQ.Regalona.r1.2BG0005770, CQ.Regalona.r1.2BG0014950, CQ.Regalona.r1.7BG0000380, CQ.Regalona.r1.7BG0016370, CQ.Regalona.r1.7BG0017810, CQ.Regalona.r1.8BG0011440, CQ.Regalona.r1.8BG0019630, CQ.Regalona.r1.9AG0012870, CQ.Regalona.r1.9AG0012990, CQ.Regalona.r1.9AG0020090
Anacardiaceae	Pistacia vera	7	pistato.v30051160, pistato.v30051420, pistato.v30053570 ... pistato.v30079740, pistato.v30231360, pistato.v30248360, pistato.v30248540
Apiaceae	Apium graveolens	1	Ag4G01102
Arecaceae	Cocos nucifera	4	scaffold010649G000010, scaffold013905G000010 ... scaffold020636G000020, scaffold026009G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC113463296
Asteraceae	Flaveria trinervia	1	Ftri7G04826
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G0210, Ceq01G0305, Ceq01G0319, Ceq01G0332, Ceq01G0588 ... Ceq01G0734, Ceq01G0754, Ceq05G1246
Casuarinaceae	Casuarina glauca	12	Cgl01G0168, Cgl01G0273, Cgl01G0275, Cgl01G0279, Cgl01G0282 ... Cgl01G0913, Cgl02G3035, Cgl04G2658, Cgl05G0270, Cgl06G0120, Cgl06G0205, Cgl09G0198
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g21220
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4453
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG03.1911, evm.TU.LG05.1168, evm.TU.LG05.1170 ... evm.TU.LG06.1169, evm.TU.LG06.1185
Plantaginaceae	Plantago ovata	10	Pov_00009514, Pov_00016723, Pov_00016901, Pov_00019932 ... Pov_00020389, Pov_00023077, Pov_00025341, Pov_00034141, Pov_00034143, Pov_00041304
Poaceae	Echinochloa crus-galli	26	AH04.2257, AH04.2258, AH04.2259, AH04.2313, AH06.1, AH08.414 ... AH09.823, AH09.825, AH09.826, BH02.4507, BH04.931, BH04.948, BH05.3486, BH08.423, BH08.937, BH08.943, BH09.817, CH02.1404, CH04.1104, CH04.401, CH04.881, CH08.1067, CH08.1068, CH08.497, CH09.878, CH09.879
Poaceae	Eleusine coracana subsp. coracana	22	gene-QOZ80_1AG0003970, gene-QOZ80_1BG0052390 ... gene-QOZ80_1BG0052410, gene-QOZ80_2AG0114160, gene-QOZ80_3BG0269440, gene-QOZ80_4AG0301510, gene-QOZ80_5AG0391590, gene-QOZ80_5AG0396920, gene-QOZ80_5BG0445450, gene-QOZ80_5BG0445460, gene-QOZ80_7AG0552230, gene-QOZ80_7BG0583230, gene-QOZ80_7BG0583240, gene-QOZ80_7BG0583260, gene-QOZ80_7BG0584230, gene-QOZ80_7BG0588680, gene-QOZ80_8AG0624410, gene-QOZ80_8AG0631400, gene-QOZ80_8AG0631410, gene-QOZ80_9AG0678340, gene-QOZ80_9AG0678350, gene-QOZ80_9AG0684150
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.1HG0094070.1, HORVU.MOREX.r3.1HG0094080.1 ... HORVU.MOREX.r3.1HG0094090.1, HORVU.MOREX.r3.2HG0216800.1, HORVU.MOREX.r3.2HG0216840.1.CDS1, HORVU.MOREX.r3.2HG0216880.1, HORVU.MOREX.r3.5HG0420380.1, HORVU.MOREX.r3.6HG0630800.1, HORVU.MOREX.r3.6HG0630920.1, HORVU.MOREX.r3.6HG0633870.1
Poaceae	Lolium multiflorum	16	gene-QYE76_006631, gene-QYE76_015091, gene-QYE76_015099 ... gene-QYE76_015100, gene-QYE76_015101, gene-QYE76_015102, gene-QYE76_015103, gene-QYE76_026485, gene-QYE76_057808, gene-QYE76_058082, gene-QYE76_062972, gene-QYE76_063664, gene-QYE76_071388, gene-QYE76_071389, gene-QYE76_071390, gene-QYE76_071391
Poaceae	Oryza coarctata	7	Oco04G014780, Oco12G013910, Oco15G005230, Oco18G001980 ... Oco18G001990, Oco21G003130, Oco21G003170
Poaceae	Oryza sativa	11	LOC_Os02g38386.1, LOC_Os02g38392.1, LOC_Os05g23255.1 ... LOC_Os08g16450.1, LOC_Os08g16460.1, LOC_Os11g10550.1, LOC_Os11g10570.1, LOC_Os11g10610.1, LOC_Os11g10620.1, LOC_Os11g10760.1, LOC_Os11g10770.1
Poaceae	Paspalum vaginatum	16	gene-BS78_03G310900, gene-BS78_04G184800, gene-BS78_K184500 ... gene-BS78_05G016000, gene-BS78_05G065500, gene-BS78_05G139700, gene-BS78_05G139900, gene-BS78_05G186200, gene-BS78_05G223900, gene-BS78_05G224000, gene-BS78_05G224200, gene-BS78_07G066000, gene-BS78_08G046200, gene-BS78_K184700, gene-BS78_K259900, gene-BS78_K260000
Poaceae	Puccinellia tenuiflora	16	Pt_Chr0500612, Pt_Chr0500614, Pt_Chr0500615, Pt_Chr0500616 ... Pt_Chr0500833, Pt_Chr0505841, Pt_Chr0505843, Pt_Chr0505844, Pt_Chr0505846, Pt_Chr0505850, Pt_Chr0505853, Pt_Chr0505855, Pt_Chr0505856, Pt_Chr0601196, Pt_Chr0603888, Pt_Chr0704763
Poaceae	Sporobolus alterniflorus	20	Chr03G001180, Chr04G014910, Chr04G014920, Chr04G023030 ... Chr08G001250, Chr08G003960, Chr15G009980, Chr15G009990, Chr17G005490, Chr17G010630, Chr19G018750, Chr20G004080, Chr24G002570, Chr25G015980, Chr25G016940, Chr25G016950, Chr25G016960, Chr25G016980, Chr30G015830, Chr31G003490
Poaceae	Thinopyrum elongatum	18	Tel1E01G111200, Tel1E01G111400, Tel1E01G732500 ... Tel2E01G775600, Tel3E01G887900, Tel4E01G619400, Tel5E01G016200, Tel5E01G770900, Tel5E01G771000, Tel6E01G110200, Tel6E01G729100, Tel6E01G729200, Tel6E01G729500, Tel6E01G730600, Tel6E01G731100, Tel7E01G145700, Tel7E01G171800, Tel7E01G171900
Poaceae	Triticum dicoccoides	38	gene_TRIDC1AG063640, gene_TRIDC1AG063650 ... gene_TRIDC1AG063700, gene_TRIDC1AG063710, gene_TRIDC1BG065740, gene_TRIDC1BG065750, gene_TRIDC1BG065760, gene_TRIDC1BG072890, gene_TRIDC1BG072910, gene_TRIDC1BG072940, gene_TRIDC2AG076590, gene_TRIDC2AG082340, gene_TRIDC2AG082360, gene_TRIDC2BG090420, gene_TRIDC2BG090430, gene_TRIDC3BG085760, gene_TRIDC4AG003670, gene_TRIDC4AG003680, gene_TRIDC4AG062210, gene_TRIDC4BG062450, gene_TRIDC4BG062460, gene_TRIDC4BG062480, gene_TRIDC5AG001050, gene_TRIDC5AG010590, gene_TRIDC5AG045970, gene_TRIDC5BG001030, gene_TRIDC5BG001080, gene_TRIDC5BG001090, gene_TRIDC5BG001140, gene_TRIDC5BG009710, gene_TRIDC5BG012370, gene_TRIDC5BG074650, gene_TRIDC6AG058910, gene_TRIDC6BG016590, gene_TRIDC6BG069670, gene_TRIDC6BG069710, gene_TRIDC7AG007600, gene_TRIDC7AG008660
Poaceae	Triticum aestivum	67	TraesCS1A02G433600.1, TraesCS1A02G434000.1 ... TraesCS1B02G416200.1, TraesCS1B02G442200.1, TraesCS1B02G469500.1, TraesCS1B02G469700.1, TraesCS1B02G470000.1, TraesCS1B02G470100.1, TraesCS1B02G470300.1, TraesCS1B02G470400.1.cds1, TraesCS1B02G470500.1, TraesCS1B02G470600.1, TraesCS1D02G419600.1, TraesCS1D02G443300.1, TraesCS1D02G443400.1, TraesCS1D02G443551.1.cds1, TraesCS2B02G161100.1, TraesCS2B02G624900.2, TraesCS2D02G573600.1, TraesCS2D02G573800.1, TraesCS2D02G573900.1, TraesCS3B02G593900.3, TraesCS3D02G531700.1, TraesCS4A02G026300.1, TraesCS4A02G380900.1.cds1, TraesCS4A02G389400.1.cds1, TraesCS4B02G382600.1, TraesCS4D02G103400.1, TraesCS5A02G007200.1.cds1, TraesCS5B02G005700.1, TraesCS5B02G058900.1, TraesCS5B02G059000.1, TraesCS5B02G499300.1.cds1, TraesCS5B02G499400.1.cds1, TraesCS5B02G499500.1, TraesCS5D02G005300.1, TraesCS5D02G005400.1, TraesCS5D02G005416.1.cds1, TraesCS5D02G005600.1, TraesCS5D02G029000.1, TraesCS5D02G499200.1, TraesCS5D02G499300.1, TraesCS5D02G499400.1, TraesCS5D02G499500.1.cds1, TraesCS5D02G499600.1.cds1, TraesCS6A02G400900.1, TraesCS6A02G401000.1, TraesCS6B02G117100.2, TraesCS6B02G440900.1, TraesCS6B02G441200.1, TraesCS6B02G442100.1, TraesCS6B02G442200.1, TraesCS6B02G443000.1, TraesCS6B02G443300.1, TraesCS6D02G384900.1, TraesCS7A02G069600.1, TraesCS7A02G069800.1, TraesCS7D02G065100.1, TraesCS7D02G065200.1, TraesCS7D02G065500.1, TraesCSU02G113800.1, TraesCSU02G132000.1, TraesCSU02G141500.1, TraesCSU02G153000.1, TraesCSU02G153200.1, TraesCSU02G160400.1, TraesCSU02G201600.1
Poaceae	Zea mays	1	Zm00001eb116510_P001
Poaceae	Zoysia japonica	8	nbis-gene-23321, nbis-gene-3245, nbis-gene-32534 ... nbis-gene-37568, nbis-gene-48962, nbis-gene-50430, nbis-gene-54870, nbis-gene-55392
Poaceae	Zoysia macrostachya	6	Zma_g19194, Zma_g19315, Zma_g20769, Zma_g20770, Zma_g5905 ... Zma_g7335
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.2254, evm.TU.LG17.598
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g21290
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-27940, nbisL1-mrna-28166
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-10305, nbisL1-mrna-2664
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000023l.130
Rhizophoraceae	Kandelia obovata	3	Maker00008233, Maker00010114, Maker00019105
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-21450, nbisL1-mrna-21453, nbisL1-mrna-21719 ... nbisL1-mrna-22196
Salicaceae	Populus euphratica	9	populus_peu13050, populus_peu13051, populus_peu13065 ... populus_peu13084, populus_peu13085, populus_peu23925, populus_peu24698, populus_peu24712, populus_peu27828
Tamaricaceae	Reaumuria soongarica	4	MSTRG.13832_chr08_+, MSTRG.13848_chr08_-, STRG.24360_chr08_- ... STRG.8738_chr03_+