Basic Information
Locus ID:
Ag4G01101
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 117731495 | 117733999 | + | Ag4G01101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 25,669.75 Da | 58.29 | 101.37 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 10 | 43 | 1.1E-6 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 132 | 153 | 1.0 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 54 | 3.27E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 53 | 205 | 1.28E-20 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 40 | 2.0E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 218 | 1.3E-29 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 156 | 181 | 0.0022 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 74 | 102 | 210.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 13 | 53 | 1.7E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 105 | 130 | 0.57 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 131 | 155 | 0.51 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67140.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_017243371.1 | PREDICTED: F-box protein At5g67140 [Daucus carota subsp. sativus] | 0 |
| Q9FH99 | F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166AYW6 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.508867 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 40.025295 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.061451 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 33.117912 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.551849 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 36.575039 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 41.488083 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 40.068188 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.526756 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.823378 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.009985 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.909954 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.910065 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.18792 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.957609 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.029787 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.936968 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.179165 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.940294 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.651338 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.328808 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.306573 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.946215 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.205661 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.420889 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.647535 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.833709 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 28.867239 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.674984 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.069105 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.969019 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.588804 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.060863 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.712492 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.085228 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.605151 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.297355 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 14.280423 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.212991 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.00915 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 30.81703 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 24.372549 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 47.399761 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.559458 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.279776 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.483632 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.749754 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.645398 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.201192 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.27119 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17417, jg30669 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23948 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027432 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13042, Sbi_jg52835 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9040 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010209 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33922, Sgl39289, Sgl39307 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001061, gene:ENSEOMG00000025584 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025190, CQ.Regalona.r1.6BG0012600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30206150 |
| Apiaceae | Apium graveolens | 1 | Ag4G01101 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G005070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713765 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1456.V1.1, AsparagusV1_08.2670.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26003 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004869m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1331 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1336 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g11610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03470 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6639 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2111 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023902 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06293 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.369, BH06.487, CH06.488 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0510030, gene-QOZ80_6BG0462160 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0655850.2, HORVU.MOREX.r3.7HG0655860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028419 |
| Poaceae | Oryza coarctata | 2 | Oco11G003110, Oco12G003080 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g07000.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G054900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402072, Pt_Chr0402108 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G022130, Chr14G002350, Chr21G001460 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G261800, Tel7E01G261900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG008370, gene_TRIDC7AG014920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G127700.2, TraesCS7A02G127800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb375600_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34797, nbis-gene-5097 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29162, Zma_g31412 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2735, evm.TU.LG23.941 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g03900 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.362 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-619, nbisL1-mrna-705 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11866 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6086 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1023 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012828 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6425 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2219 |
| Salicaceae | Populus euphratica | 1 | populus_peu14403 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621566 |
| Solanaceae | Solanum chilense | 1 | SOLCI000735300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011376 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3197, gene_3417 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1753, TC11G0259 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25860.v3.1 |