Basic Information
Locus ID:
Ag4G01096
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RALF-like 34
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 117355851 | 117356502 | + | Ag4G01096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 17,067.94 Da | 57.22 | 77.62 | -0.37 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67070.1 | ralf-like 34. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. | 0 |
| RefSeq | XP_035836584.1 | protein RALF-like 34 [Helianthus annuus] | 0 |
| Q9FHA6 | Protein RALF-like 34 OS=Arabidopsis thaliana OX=3702 GN=RALFL34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166AZ20 | Protein RALF-like 34 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010886 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.762331 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.35047 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.476216 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.698341 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.819475 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.884284 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.36475 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.404062 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 64.574684 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 70.919876 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 77.522964 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 63.52499 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.296185 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 51.214039 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 41.632206 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 41.382668 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 31.400478 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.896515 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.727272 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.158844 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.382893 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.105961 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.278408 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.467916 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.28861 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.540318 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.584728 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.281001 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.305133 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.277501 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.11872 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.425117 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.063004 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 39.626694 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.058964 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.126272 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.856492 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.246753 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.141901 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.463887 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.565656 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.482946 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.202299 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.747369 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.082527 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.22673 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 50.404572 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 51.187557 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.116177 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10667, jg17424 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23943 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027447 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13029 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9026 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010219 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33935, Sgl39320, Sgl39338 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025070, CQ.Regalona.r1.6BG0026570 |
| Apiaceae | Apium graveolens | 1 | Ag4G01096 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G010560, COCNU_15G002010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701254, gene-LOC103703194 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.739.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G33786, Ftri18G15623, Ftri1G31594 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005130m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29610.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g000390.2N, BniB06g014910.2N, BniB07g043800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1823 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1326 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07770 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10041, nbisL1-mrna-6634 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.416 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029214 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.1095, evm.TU.LG17.1102 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g20340 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.357, evm.TU.Scaffold_6_RagTag.1871 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19178, nbisL1-mrna-612, nbisL1-mrna-698 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11861, nbisL1-mrna-12229, nbisL1-mrna-6562 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11911, nbisL1-mrna-6080, nbisL1-mrna-6602 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.465, add.evm.TU.utg000019l.425 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007475, Maker00012741 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19341, nbisL1-mrna-23006 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10009, nbisL1-mrna-2226, nbisL1-mrna-3218 |
| Salicaceae | Populus euphratica | 3 | populus_peu14395, populus_peu23386, populus_peu37474 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622134 |
| Solanaceae | Solanum chilense | 1 | SOLCI000524000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010343 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.6659_chr03_-, gene_3192, gene_3420 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2194 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11780.v3.1 |