Basic Information
Locus ID:
Ag4G01074
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 112771706 | 112790435 | + | Ag4G01074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 178,412.80 Da | 40.49 | 89.23 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 155 | 648 | 1.61E-11 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 23 | 275 | 1.6E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 283 | 1.2E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 192 | 229 | 56.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 183 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 31.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 275 | 9.03805 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1307 | 1332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1373 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1373 | 1419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1171 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50590.2 | - | 0 |
| RefSeq | XP_017241424.1 | PREDICTED: uncharacterized protein LOC108214131 [Daucus carota subsp. sativus] | 0 |
| P39706 | COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SWD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166B9R3 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011292 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.320404 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.209904 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.747715 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.854193 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.390047 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.246107 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.311237 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.780136 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 57.969425 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 52.717987 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 60.485485 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 51.278233 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 51.903702 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 41.886921 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 27.67214 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.00782 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.005615 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 44.998627 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.257397 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 40.512333 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 43.193813 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 35.197643 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 36.683418 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.728825 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.839657 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 48.093822 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 40.513882 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.974262 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 46.005676 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.473277 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.205866 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.543777 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.164095 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.018872 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.47444 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.023034 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.0159 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.098651 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.244473 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.782238 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.56105 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.074432 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.111242 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.229214 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.561836 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.662521 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.924881 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.578676 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.647816 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.5212 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40059 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23922 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032204 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30077, Sbi_jg43521 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18374 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004148, GOSA_00004150 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66141, Sgl70456 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012630, gene:ENSEOMG00000018342 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0005180, CQ.Regalona.r1.2BG0004590 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30206670, pistato.v30206680 |
| Apiaceae | Apium graveolens | 2 | Ag4G01074, Ag4G01083 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G004080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706397 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1655.V1.1, AsparagusV1_04.1656.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G16875 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G50590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010058m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g11620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g064460.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1292 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10030, nbisL1-mrna-6626 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2171 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023956 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36287 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1117, BH01.1576, CH01.1645 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0457380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028032 |
| Poaceae | Oryza coarctata | 2 | Oco17G004520, Oco18G004560 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g24260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G155700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402312, Pt_Chr0404152 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G000620, Chr11G024590, Chr14G000270, Chr14G000620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G056300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG072090, gene_TRIDC7AG000880 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G485300.1, TraesCS7A02G009900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051800_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40227, nbis-gene-51219 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28981, Zma_g31224 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.589, evm.TU.LG06.751, evm.TU.LG25.738 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g16880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1898, evm.TU.Scaffold_6_RagTag.1899 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17240 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17114 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11886, nbisL1-mrna-11887 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1156, evm.TU.utg000011l.1157 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007718 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15519, nbisL1-mrna-15520 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3193 |
| Salicaceae | Populus euphratica | 5 | populus_peu14333, populus_peu14335, populus_peu23419 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622073 |
| Solanaceae | Solanum chilense | 1 | SOLCI003142400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011004 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3424, gene_8113 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1702 |
| Zosteraceae | Zostera marina | 2 | Zosma03g34690.v3.1, Zosma03g34700.v3.1 |