Basic Information
Locus ID:
Ag4G01043
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 108998227 | 109000648 | - | Ag4G01043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 26,191.21 Da | 35.81 | 94.98 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 40 | 87 | 4.2E-8 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 128 | 221 | 3.7E-30 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2 | 134 | 8.8E-19 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 44 | 76 | 5.4E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 41 | 75 | 11.180584 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47580.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_017241718.1 | PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Daucus carota subsp. sativus] | 0 |
| P0C7R1 | Pentatricopeptide repeat-containing protein DWY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DYW1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161WU06 | DYW_deaminase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010949 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.08776 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.535804 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.439374 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.40089 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.509132 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.450088 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.114529 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.471513 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.711609 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.703571 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.497628 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.29322 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.962327 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.360746 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.417288 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.760907 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.384456 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.247583 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.087391 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.378562 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.237293 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.599122 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.228783 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.716647 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.496507 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.725908 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.457547 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.931278 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.291938 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.69979 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.214291 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.099136 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.188103 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.469602 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.19558 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.085252 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.400121 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.51113 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.470959 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.988378 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.504171 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.632429 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13119, jg32704 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20102, Sbi_jg24762, Sbi_jg30858, Sbi_jg44747 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000001426, gene:ENSEOMG00000001999 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30018980, pistato.v30187750 |
| Apiaceae | Apium graveolens | 1 | Ag4G01043 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G009990, scaffold000429G000160 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103721177, gene-LOC120105606, gene-LOC120109483 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_01.538.V1.1, AsparagusV1_03.1919.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G47580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011729m.g.v1.0, Thhalv10012004m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g34620.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB04g030440.2N, BniB07g008840.2N, BniB07g008950.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1234 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1341 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029399, Pov_00031471 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G35834 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.27, BH01.605, CH01.587 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0214540, gene-QOZ80_3BG0259760 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0429830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061613 |
| Poaceae | Oryza coarctata | 3 | Oco01G010650, Oco05G024590, Oco06G025530 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g55840.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G068200, gene-BS78_06G128500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305355, Pt_Ctg00194 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G004210, Chr01G024700, Chr04G029450, Chr12G036490 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G638000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG058640, gene_TRIDC5BG062800 |
| Poaceae | Triticum aestivum | 3 | TraesCS2D02G002900.1.cds1, TraesCS5A02G403500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb213980_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-16304, nbis-gene-22668, nbis-gene-5666 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2697 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12099 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.259 |
| Salicaceae | Populus euphratica | 3 | populus_peu10497, populus_peu26565, populus_peu31937 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1380, TC01G1879 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01320.v3.1 |