halophFGD

Basic Information

Locus ID: Ag4G01026

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LYK5-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	107196108	107198187	+	Ag4G01026

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.17	66,958.53 Da	43.40	102.23	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00118	LysM	101	147	3.44326E-4	IPR018392
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	340	454	2.5E-19	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	311	564	5.19E-46	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	381	464	2.4E-19	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	296	380	8.9E-12	-
Gene3D	G3DSA:3.10.350.10	LysM domain	101	149	1.3E-5	IPR036779
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	465	574	1.2E-12	-
SMART	SM00257	LysM_2	102	149	0.0069	IPR018392
ProSiteProfiles	PS51782	LysM domain profile.	101	148	10.190353	IPR018392
ProSiteProfiles	PS50011	Protein kinase domain profile.	313	564	18.690107	IPR000719
ProSitePatterns	PS00109	Tyrosine protein kinases specific active-site signature.	431	443	-	IPR008266

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33580.1	Protein kinase superfamily protein.
RefSeq	XP_017240940.1	PREDICTED: serine/threonine receptor-like kinase NFP [Daucus carota subsp. sativus]
Swiss-Prot	Q0GXS4	Serine/threonine receptor-like kinase NFP OS=Medicago truncatula OX=3880 GN=NFP PE=1 SV=1
TrEMBL	A0A166B117	Serine/threonine receptor-like kinase NFP OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010965 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.114552	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.093879	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.043372	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.097348	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.220622	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.066996	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.174958	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.176302	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.239713	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.142168	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.089722	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.073587	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.584971	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.929425	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.180039	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.126658	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.456867	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.036911	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.133731	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.112654	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.049765	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.286772		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.44079		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.734937		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.621008		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.493745		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.761845		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.717986	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.62346	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.02774	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.843076	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.076673	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.199716	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.680193	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.866699	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.039672	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.269673	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.292704	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.044756	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg12638, jg27829, jg30621
Aizoaceae	Mesembryanthemum crystallinum	1	gene_6423
Amaranthaceae	Atriplex hortensis	3	Ah029151, Ah029152, Ah029153
Amaranthaceae	Beta vulgaris	1	BVRB_7g166020
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg1092, Sbi_jg1096, Sbi_jg1097, Sbi_jg1100, Sbi_jg1101 ... Sbi_jg35484, Sbi_jg35486, Sbi_jg35488
Amaranthaceae	Salicornia europaea	4	Seu_jg3601, Seu_jg3602, Seu_jg3604, Seu_jg3605
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00022882, GOSA_00022885
Amaranthaceae	Suaeda glauca	4	Sgl74255, Sgl74334, Sgl74335, Sgl77824
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006629, gene:ENSEOMG00000008352 ... gene:ENSEOMG00000036222, gene:ENSEOMG00000039114, gene:ENSEOMG00000039655, gene:ENSEOMG00000039913, gene:ENSEOMG00000040084, gene:ENSEOMG00000040200
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.7AG0011420, CQ.Regalona.r1.7AG0011430 ... CQ.Regalona.r1.7AG0011440, CQ.Regalona.r1.7BG0013580, CQ.Regalona.r1.7BG0013590, CQ.Regalona.r1.7BG0013600, CQ.Regalona.r1.7BG0013610
Anacardiaceae	Pistacia vera	1	pistato.v30235780
Apiaceae	Apium graveolens	4	Ag1G01816, Ag4G01026, Ag6G01493, Ag9G01739
Arecaceae	Cocos nucifera	2	COCNU_05G000280, COCNU_07G007720
Arecaceae	Phoenix dactylifera	3	gene-LOC103699281, gene-LOC103702746, gene-LOC103723952
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2472.V1.1, AsparagusV1_08.1511.V1.1 ... AsparagusV1_08.1512.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G04152, Ftri17G21238, Ftri6G11221, FtriNA20598
Casuarinaceae	Casuarina equisetifolia	2	Ceq07G0375, Ceq09G0744
Casuarinaceae	Casuarina glauca	3	Cgl07G0386, Cgl07G0387, Cgl09G0806
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG11.913
Plantaginaceae	Plantago ovata	2	Pov_00019995, Pov_00029367
Plumbaginaceae	Limonium bicolor	1	Lb1G07902
Poaceae	Echinochloa crus-galli	6	AH01.4457, AH07.3007, BH07.2832, CH01.5067, CH07.2912 ... Contig192.99
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0140990, gene-QOZ80_2BG0196610 ... gene-QOZ80_3AG0239600, gene-QOZ80_3BG0288430
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0394920.1.CDS1 ... HORVU.MOREX.r3.6HG0604320.1
Poaceae	Lolium multiflorum	3	gene-QYE76_024435, gene-QYE76_068469, gene-QYE76_069786
Poaceae	Oryza coarctata	4	Oco03G018260, Oco04G019010, Oco06G007610, Oco06G007620
Poaceae	Oryza sativa	2	LOC_Os02g45750.1, LOC_Os03g13080.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G431400, gene-BS78_04G238300
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0203728
Poaceae	Sporobolus alterniflorus	1	Chr09G023440
Poaceae	Thinopyrum elongatum	2	Tel4E01G409200, Tel6E01G481500
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG009120, gene_TRIDC4BG041760 ... gene_TRIDC6AG039880, gene_TRIDC6BG046770
Poaceae	Triticum aestivum	6	TraesCS4A02G061400.1.cds1, TraesCS4B02G236800.1.cds1 ... TraesCS4D02G238300.1.cds1, TraesCS6A02G258900.1, TraesCS6B02G266500.1, TraesCS6D02G240100.1
Poaceae	Zea mays	4	Zm00001eb009380_P001, Zm00001eb187300_P001 ... Zm00001eb250700_P001, Zm00001eb399560_P001
Poaceae	Zoysia japonica	2	nbis-gene-22254, nbis-gene-4011
Poaceae	Zoysia macrostachya	2	Zma_g16884, Zma_g4111
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.949, evm.TU.LG12.794
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g17220
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.286, evm.TU.Scaffold_3_RagTag.375 ... evm.TU.Scaffold_3_RagTag.376
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1548, nbisL1-mrna-1549, nbisL1-mrna-17166 ... nbisL1-mrna-337, nbisL1-mrna-537
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-6967, nbisL1-mrna-7562
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-6018, nbisL1-mrna-6113
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000019l.413, add.evm.TU.utg000019l.445 ... evm.TU.utg000019l.1001
Rhizophoraceae	Kandelia obovata	1	Maker00012766
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-15563, nbisL1-mrna-19333, nbisL1-mrna-6402 ... nbisL1-mrna-6473
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-2292, nbisL1-mrna-3136, nbisL1-mrna-3139
Salicaceae	Populus euphratica	5	populus_peu07461, populus_peu07462, populus_peu14290 ... populus_peu21474, populus_peu23509
Solanaceae	Lycium barbarum	3	gene-LOC132608981, gene-LOC132609067, gene-LOC132622935
Solanaceae	Solanum chilense	4	SOLCI002407300, SOLCI002660500, SOLCI003953000 ... SOLCI003953100
Solanaceae	Solanum pennellii	3	gene-LOC107009582, gene-LOC107030506, gene-LOC107030507
Tamaricaceae	Reaumuria soongarica	1	STRG.20256_chr09_-
Tamaricaceae	Tamarix chinensis	1	TC06G2121
Zosteraceae	Zostera marina	1	Zosma06g28740.v3.1