Basic Information
Locus ID:
Ag4G00989
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
leucine-rich repeat receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 103079628 | 103085238 | + | Ag4G00989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 49,576.29 Da | 35.91 | 88.69 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 141 | 397 | 8.6E-53 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 110 | 396 | 4.65E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 101 | 213 | 3.2E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 214 | 423 | 7.0E-57 | - |
| SMART | SM00220 | serkin_6 | 138 | 402 | 1.0E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 138 | 401 | 40.131386 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 258 | 270 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15730.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017237360.1 | PREDICTED: calcium/calmodulin-regulated receptor-like kinase 2 [Daucus carota subsp. sativus] | 0 |
| Q9LFV3 | Calcium/calmodulin-regulated receptor-like kinase 2 OS=Arabidopsis thaliana OX=3702 GN=CRLK2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166B1Z4 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011004 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.497892 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.851896 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.766596 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.812376 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.364784 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.911409 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.574125 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.439243 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.820206 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.224527 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.922112 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.821903 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.085957 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.046795 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 24.1637 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.694136 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.855608 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.714054 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.313509 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 39.347992 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.980396 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.119621 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.4748 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.212618 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.496557 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.76478 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.64253 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.61339 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.583229 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.333859 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.935869 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.702147 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.870148 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.71213 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 36.660614 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.700407 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.872017 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 14.687676 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.259298 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.304207 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.938962 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 88.924179 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 64.120224 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.325981 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.432175 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 69.910507 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 32.664288 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.352547 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.303051 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.25028 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40153 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035631 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21677, Sbi_jg22137 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16066 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008682, GOSA_00008684 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62616, Sgl67182 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020298, gene:ENSEOMG00000020931 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018010, CQ.Regalona.r1.2BG0019570 |
| Apiaceae | Apium graveolens | 1 | Ag4G00989 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706565 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2237.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G21432, Ftri18G08587, Ftri1G07951 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15730.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013581m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28390.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g047110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0521 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0478 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07330 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.347 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023715 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02020 |
| Poaceae | Echinochloa crus-galli | 2 | AH06.1162, CH06.1327 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0517330, gene-QOZ80_6BG0469220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0671890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029441 |
| Poaceae | Oryza coarctata | 1 | Oco12G007430 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g17285.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G119100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404424 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G017860, Chr14G005580, Chr21G005130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G386100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG026840, gene_TRIDC7BG017380 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G213000.1, TraesCS7B02G119700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380640_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-45578, nbis-gene-55451 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29500, Zma_g31750 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.714, evm.TU.LG25.608 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1679, evm.TU.Scaffold_6_RagTag.411 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15317, nbisL1-mrna-1977, nbisL1-mrna-2123 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5073, nbisL1-mrna-6721 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2878, nbisL1-mrna-325 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.221, evm.TU.utg000019l.220 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001637, Maker00006844 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13043, nbisL1-mrna-3819 |
| Salicaceae | Populus euphratica | 2 | populus_peu09399, populus_peu09424 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621345 |
| Solanaceae | Solanum chilense | 1 | SOLCI003995700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011453 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6314 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0120 |
| Zosteraceae | Zostera marina | 4 | Zosma02g21030.v3.1, Zosma03g20500.v3.1, Zosma03g20530.v3.1 ... |