halophFGD

Basic Information

Locus ID: Ag4G00962

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Carbohydrate-binding protein of the ER

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	98963791	98967349	-	Ag4G00962

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.40	108,744.73 Da	44.49	92.75	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	134	410	1.93351E-93	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	134	409	6.2E-52	IPR001245
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	571	852	8.3E-25	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	542	852	5.6E-53	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	97	411	4.99E-82	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	538	643	7.7E-15	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	206	430	1.5E-64	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	88	205	3.1E-35	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	644	873	1.6E-41	-
SMART	SM00220	serkin_6	128	412	3.5E-42	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	128	412	39.495354	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	566	865	22.859638	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	134	158	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	258	270	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G51550.1	Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception.
RefSeq	XP_017239109.1	PREDICTED: putative receptor-like protein kinase At5g39000 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SCZ4	Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1
TrEMBL	A0A161XZM6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011031 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.974018	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.435474	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.068261	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.161257	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.261984	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.42771	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.305793	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.353176	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.284173	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.951992	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.79387	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.45944	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.767955	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.996773	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.224715	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.393715	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.337091	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.116752	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	6.218857	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.722911	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.052429	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.273503	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.077415	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.133641	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.188052	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.019612	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.027658	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.080164		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.084164		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.156371		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.26644		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.30791		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.213636		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.107269		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.475652		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.81068		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.648266	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.661206	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.219755	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.833465	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	11.566464	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.441866	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.235332	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.123955	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.169273	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.874232	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.441982	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.640352	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	2	Ag4G00962, Ag4G00964