Basic Information
Locus ID:
Ag4G00897
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
G-quadruplex DNA unwinding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 89447310 | 89448169 | - | Ag4G00897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 21,967.17 Da | 24.66 | 90.78 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 29 | 116 | 4.38803E-16 | - |
| Pfam | PF02721 | Domain of unknown function DUF223 | 53 | 139 | 4.7E-8 | IPR003871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 21 | 123 | 2.74E-15 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 17 | 121 | 3.8E-15 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 123 | 192 | 1.7E-7 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017228584.1 | PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B8X4 | DUF223 domain-containing protein (Fragment) OS=Apium graveolens OX=4045 GN=AG4045_005644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 35 | Ag10G00978, Ag10G02928, Ag11G04457, Ag11G04458, Ag11G04459 ... |