halophFGD

Basic Information

Locus ID: Ag4G00862

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	84195261	84198750	+	Ag4G00862

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.97	15,950.78 Da	76.44	83.57	-0.47

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	1	133	4.34185E-57	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	1	132	5.7E-37	IPR000608
SUPERFAMILY	SSF54495	UBC-like	1	138	2.26E-46	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	1	140	1.7E-47	IPR016135
SMART	SM00212	ubc_7	1	138	3.3E-42	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	1	138	41.225235	IPR000608
ProSitePatterns	PS00183	Ubiquitin-conjugating (UBC) active site signature.	65	80	-	IPR023313

KEGG Pathway

KO Term:

K10573 (ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G02760.1	ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.
RefSeq	XP_017242284.1	PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Daucus carota subsp. sativus]
Swiss-Prot	P42745	Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1
TrEMBL	A0A166B5R2	UBC core domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011148 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.592543	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.181378	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.445814	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.200912	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13099, jg18627, jg25771
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18215, gene_19609
Amaranthaceae	Atriplex hortensis	2	Ah000942, Ah014063
Amaranthaceae	Beta vulgaris	1	BVRB_6g154480
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg31182, Sbi_jg43139, Sbi_jg45738
Amaranthaceae	Salicornia europaea	2	Seu_jg11587, Seu_jg25713
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004584, GOSA_00026535
Amaranthaceae	Suaeda glauca	4	Sgl54647, Sgl54648, Sgl59986, Sgl59987
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002648, gene:ENSEOMG00000006960 ... gene:ENSEOMG00000015673, gene:ENSEOMG00000024786, gene:ENSEOMG00000025334, gene:ENSEOMG00000025569
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5BG0022550, CQ.Regalona.r1.6AG0001650 ... CQ.Regalona.r1.6BG0001760
Anacardiaceae	Pistacia vera	3	pistato.v30093150, pistato.v30137570, pistato.v30137580
Apiaceae	Apium graveolens	4	Ag2G01591, Ag4G00862, Ag8G01405, Ag8G01407
Arecaceae	Cocos nucifera	2	COCNU_06G000040, COCNU_14G006340
Arecaceae	Phoenix dactylifera	4	gene-LOC103696455, gene-LOC103704901, gene-LOC103709769 ... gene-LOC103719920
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.2310.V1.1, AsparagusV1_03.474.V1.1 ... AsparagusV1_05.1693.V1.1, AsparagusV1_06.811.V1.1, AsparagusV1_07.3308.V1.1, AsparagusV1_08.3298.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G33782, Ftri1G08110, Ftri6G30319
Brassicaceae	Arabidopsis thaliana	3	AT1G14400.1, AT2G02760.1, AT5G62540.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005070m.g.v1.0, Thhalv10005078m.g.v1.0 ... Thhalv10008589m.g.v1.0, Thhalv10019281m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g12770.v2.2, Sp2g13870.v2.2, Sp5g24910.v2.2
Brassicaceae	Brassica nigra	10	BniB02g009430.2N, BniB02g065560.2N, BniB03g005970.2N ... BniB03g005990.2N, BniB03g047480.2N, BniB04g002170.2N, BniB04g008940.2N, BniB04g014350.2N, BniB06g010810.2N, BniB06g039530.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1808, Ceq07G0059
Casuarinaceae	Casuarina glauca	1	Cgl04G1985
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g00460, gene.Cymno01g00470
Dunaliellaceae	Dunaliella salina	1	Dusal.0477s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g15650, gene.Thate02g29010, gene.Thate08g10390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11184, nbisL1-mrna-7969
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2006, evm.TU.LG03.205, evm.TU.LG10.903
Plantaginaceae	Plantago ovata	2	Pov_00023468, Pov_00031971
Plumbaginaceae	Limonium bicolor	2	Lb0G36725, Lb2G13278
Poaceae	Echinochloa crus-galli	9	AH02.374, AH03.327, BH02.401, BH03.3919, BH03.406, CH01.432 ... CH02.445, CH03.476, CH05.260
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0012530, gene-QOZ80_1BG0061180 ... gene-QOZ80_3AG0213050, gene-QOZ80_3BG0258200, gene-QOZ80_7AG0556890, gene-QOZ80_7BG0587830
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0029270.1, HORVU.MOREX.r3.2HG0149130.1 ... HORVU.MOREX.r3.3HG0237640.1, HORVU.MOREX.r3.5HG0517500.1
Poaceae	Lolium multiflorum	4	gene-QYE76_010323, gene-QYE76_042648, gene-QYE76_050807 ... gene-QYE76_061431
Poaceae	Oryza coarctata	6	Oco05G025740, Oco06G026610, Oco09G003750, Oco10G003700 ... Oco13G002100, Oco14G002200
Poaceae	Oryza sativa	3	LOC_Os03g57790.1, LOC_Os05g08960.1, LOC_Os07g07240.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G054300, gene-BS78_02G044400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105336, Pt_Chr0200083, Pt_Chr0303605, Pt_Chr0501608
Poaceae	Sporobolus alterniflorus	8	Chr01G003090, Chr03G005990, Chr05G011310, Chr0G004880 ... Chr12G034960, Chr19G017520, Chr24G000840, Chr28G001440
Poaceae	Thinopyrum elongatum	3	Tel2E01G455700, Tel3E01G193900, Tel5E01G671700
Poaceae	Triticum dicoccoides	7	gene_TRIDC1BG021200, gene_TRIDC2AG034200 ... gene_TRIDC2BG038730, gene_TRIDC3AG013910, gene_TRIDC3BG018390, gene_TRIDC5AG061990, gene_TRIDC5BG066150
Poaceae	Triticum aestivum	11	TraesCS1B02G140300.1, TraesCS1D02G121800.1 ... TraesCS2A02G247700.1, TraesCS2B02G270000.2, TraesCS2D02G248000.1, TraesCS3A02G112600.1, TraesCS3B02G131500.2, TraesCS3D02G114600.3, TraesCS5A02G429000.1, TraesCS5B02G431100.1, TraesCS5D02G437100.1
Poaceae	Zea mays	5	Zm00001eb060380_P001, Zm00001eb117140_P001 ... Zm00001eb213140_P002, Zm00001eb269840_P003, Zm00001eb300890_P001
Poaceae	Zoysia japonica	4	nbis-gene-16437, nbis-gene-26905, nbis-gene-35715 ... nbis-gene-6759
Poaceae	Zoysia macrostachya	4	Zma_g10091, Zma_g2599, Zma_g4781, Zma_g6035
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.830, evm.TU.LG03.280, evm.TU.LG09.2005 ... evm.TU.LG12.1426, evm.TU.LG13.333, evm.TU.LG21.39
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g01120
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.923, evm.TU.Scaffold_15_RagTag.659 ... evm.TU.Scaffold_17_RagTag.336
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14600, nbisL1-mrna-22990, nbisL1-mrna-28816
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1497, nbisL1-mrna-15565, nbisL1-mrna-316
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14860, nbisL1-mrna-15721, nbisL1-mrna-1787
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.343, evm.TU.utg000008l.356 ... evm.TU.utg000010l.45, evm.TU.utg000013l.233
Rhizophoraceae	Kandelia obovata	4	Maker00000829, Maker00002658, Maker00006743, Maker00008626
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11319, nbisL1-mrna-14548, nbisL1-mrna-7143 ... nbisL1-mrna-816
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-1532, nbisL1-mrna-15771, nbisL1-mrna-17839 ... nbisL1-mrna-8564
Salicaceae	Populus euphratica	4	populus_peu02348, populus_peu16124, populus_peu19348 ... populus_peu28520
Solanaceae	Lycium barbarum	4	gene-LOC132600798, gene-LOC132621219, gene-LOC132623275 ... gene-LOC132632666
Solanaceae	Solanum chilense	2	SOLCI000207800, SOLCI000466400
Solanaceae	Solanum pennellii	4	gene-LOC107008696, gene-LOC107011696, gene-LOC107014753 ... gene-LOC107023242
Tamaricaceae	Reaumuria soongarica	2	STRG.14046_chr05_+, gene_2081
Tamaricaceae	Tamarix chinensis	2	TC01G3273, TC03G0654
Zosteraceae	Zostera marina	2	Zosma06g29780.v3.1, Zosma06g29820.v3.1