Basic Information
Locus ID:
Ag4G00841
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
thaumatin-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 81726097 | 81726825 | + | Ag4G00841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.36 | 26,569.12 Da | 49.05 | 65.29 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09218 | TLP-PA | 12 | 230 | 2.75203E-108 | - |
| Pfam | PF00314 | Thaumatin family | 17 | 231 | 6.2E-76 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 12 | 232 | 3.14E-72 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 11 | 231 | 1.2E-75 | IPR037176 |
| SMART | SM00205 | tha2 | 13 | 231 | 4.3E-83 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 241 | 6.1E-90 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 10 | 231 | 36.307655 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 112 | 128 | 2.9E-14 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 12 | 24 | 2.9E-14 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 60 | 71 | 2.9E-14 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 221 | 230 | 2.9E-14 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40020.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_017238686.1 | PREDICTED: thaumatin-like protein [Daucus carota subsp. sativus] | 0 |
| P50699 | Thaumatin-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g18250 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6C0VEF6 | Thaumatin-like protein OS=Panax notoginseng OX=44586 GN=TLP4 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.406631 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.711655 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.610586 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.076582 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.804029 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.77369 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.096888 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.280532 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.864187 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.015801 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.198978 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.129542 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.552204 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.714469 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.917152 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.783961 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.970291 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.281382 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.499385 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.262018 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.044508 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.889196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.742565 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.403399 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.622199 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.142693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.927135 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.297037 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.675865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.461247 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.519498 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.726254 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.66145 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.674577 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.612255 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.321655 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.636711 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.724139 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.082095 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.363634 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.208645 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.093251 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.727033 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.016969 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.39351 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 42.750439 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.743322 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.5201 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.96079 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17846 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24504 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032565 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g040720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29883, Sbi_jg43346 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18544 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004304 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66347, Sgl70682 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013983, gene:ENSEOMG00000049097 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003340, CQ.Regalona.r1.2BG0007510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30174110 |
| Apiaceae | Apium graveolens | 1 | Ag4G00841 |
| Arecaceae | Cocos nucifera | 1 | scaffold000918G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716979 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2785.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17644 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G40020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027894m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g02040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g027240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1759 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1817 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4431 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.126 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023443 |
| Poaceae | Echinochloa crus-galli | 1 | AH01.2066 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0124230, gene-QOZ80_2BG0179820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0022570.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025404 |
| Poaceae | Oryza coarctata | 2 | Oco19G004130, Oco20G004120 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g27280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G247600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203267 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G009070, Chr13G015960 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G189100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017340, gene_TRIDC1BG017350 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G092200.2, TraesCS1B02G120000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb048140_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13228 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.221, evm.TU.Scaffold_6_RagTag.225 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15046 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-684 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-187 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.55 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008105 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21472 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17388 |
| Salicaceae | Populus euphratica | 1 | populus_peu24444 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622202 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010351 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2106 |