Basic Information
Locus ID:
Ag4G00830
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 80192282 | 80195350 | + | Ag4G00830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 18,566.20 Da | 38.71 | 105.95 | -0.28 |
Protein Domain:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28370.2 | - | 0 |
| RefSeq | XP_030482956.1 | uncharacterized protein LOC115699606 isoform X2 [Cannabis sativa] | 0 |
| TrEMBL | A0A161WUK8 | Tubulin-specific chaperone A OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011179 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.855594 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.215654 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.454521 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.616237 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.562454 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.559865 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.46574 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.465035 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.450745 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.636048 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.468985 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.099135 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.057579 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.409376 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.716931 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.960381 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.101092 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.632365 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.896513 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.222449 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.50415 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.254057 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.602856 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.643022 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.690167 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.541026 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40313 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24499 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032544 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g040850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29892, Sbi_jg43358 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18533 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004296 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66337, Sgl70670 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022222 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003420, CQ.Regalona.r1.2BG0007410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30173990 |
| Apiaceae | Apium graveolens | 1 | Ag4G00830 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G011880 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708303 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G29441 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G51430.1, AT3G28370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004882m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g17170.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g068180.2N, BniB02g068200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1770 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1828 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g05660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10296 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.116, evm.TU.LG03.2574 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023416 |
| Poaceae | Echinochloa crus-galli | 5 | AH06.994, AH06.997, BH05.3739, BH06.1019, CH06.1111 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0515460 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0668380.1, HORVU.MOREX.r3.7HG0668400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029079, gene-QYE76_052153 |
| Poaceae | Oryza coarctata | 1 | Oco12G006510 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g12940.1, LOC_Os06g13580.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G103500 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0203468, Pt_Chr0404605, Pt_Chr0602283, Pt_Chr0603303 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr11G018970, Chr21G004090 |
| Poaceae | Thinopyrum elongatum | 4 | Tel7E01G360400, Tel7E01G361400, Tel7E01G361500 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG024680, gene_TRIDC7BG015210 |
| Poaceae | Triticum aestivum | 2 | TraesCS7A02G197100.1, TraesCS7D02G198500.1 |
| Poaceae | Zea mays | 1 | Zm00001eb280040_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-50287, nbis-gene-50288, nbis-gene-51338 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29431 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG05.1048, evm.TU.LG05.1049, evm.TU.LG10.969 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1834 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2284, nbisL1-mrna-2669 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16736, nbisL1-mrna-16737 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3015 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.116 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001681 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12092 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18342 |
| Salicaceae | Populus euphratica | 4 | populus_peu01031, populus_peu23300, populus_peu23301 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622470 |
| Solanaceae | Solanum chilense | 1 | SOLCI007531400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011619 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.3855_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0083 |