Basic Information
Locus ID:
Ag4G00807
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 77049170 | 77056729 | + | Ag4G00807 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 47,456.65 Da | 34.83 | 74.92 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.160.10 | Porin | 76 | 366 | 6.5E-15 | IPR023614 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27930.1 | 0 | |
| RefSeq | XP_017238289.1 | PREDICTED: uncharacterized protein LOC108211253 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161Y042 | Omp85 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011201 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.299757 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.82404 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.40785 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.821174 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.753601 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.605687 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.908018 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.383297 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.687702 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.412788 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.807247 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.704021 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.79632 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.970783 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.913296 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.762269 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.608799 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.344404 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.30432 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.99231 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.466838 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.875814 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.227459 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.323534 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.087914 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.137066 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.52942 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.653879 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.952301 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.354331 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.366123 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.769053 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.642361 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.992862 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.032998 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.282776 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.539927 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.015783 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.617882 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.733104 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.725997 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.605016 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.555213 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.769978 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.37599 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.256904 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.474883 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.662338 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.912991 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.157429 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7707 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007363 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19132, Sbi_jg37551 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5393 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010070 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl21519, Sgl26835 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042016 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0016370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022340 |
| Apiaceae | Apium graveolens | 2 | Ag3G00854, Ag4G00807 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G005010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719432, gene-LOC120107118 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1113.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G21351, Ftri18G31361, Ftri1G18175, Ftri1G22577 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004293m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16980.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g068030.2N, BniB04g007070.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0033s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g03420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6840 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.370 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023305, Pov_00027870 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G29155, Lb7G33835, Lb7G33847 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1275, AH05.1276, BH05.1452, BH05.1453, CH05.1642 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0362070 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0091510.1, HORVU.MOREX.r3.1HG0091590.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015194 |
| Poaceae | Oryza coarctata | 3 | Oco09G017610, Oco10G017460, Oco10G017470 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g50200.2, LOC_Os05g50210.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_07G104200, gene-BS78_07G104300 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505532, Pt_Chr0505534 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G019420, Chr0G019440 |
| Poaceae | Thinopyrum elongatum | 9 | Tel1E01G690100, Tel1E01G690400, Tel1E01G690600 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC1AG061260, gene_TRIDC1AG061270 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G416500.1, TraesCS1A02G416800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb344500_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24770 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28866 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1183 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.161 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14976 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-643 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-134 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.110 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007449 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11863 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17439 |
| Salicaceae | Populus euphratica | 2 | populus_peu01007, populus_peu01046 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622734 |
| Solanaceae | Solanum chilense | 1 | SOLCI005981000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009112, gene-LOC114078070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14691 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2227 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03470.v3.1 |