Basic Information
Locus ID:
Ag4G00792
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the UDP-glycosyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 75282136 | 75283901 | - | Ag4G00792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 51,614.08 Da | 35.55 | 92.52 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03784 | GT1_Gtf-like | 14 | 432 | 3.59875E-75 | IPR002213 |
| Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 265 | 382 | 5.2E-16 | IPR002213 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 9 | 452 | 1.85E-104 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 259 | 439 | 4.0E-110 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 15 | 443 | 4.0E-110 | - |
| ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 331 | 374 | - | IPR035595 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10400.1 | UDP-Glycosyltransferase superfamily protein. | 0 |
| RefSeq | XP_017238576.1 | PREDICTED: UDP-glycosyltransferase 90A1-like [Daucus carota subsp. sativus] | 0 |
| Q9SY84 | UDP-glycosyltransferase 90A2 OS=Arabidopsis thaliana OX=3702 GN=UGT90A2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166B7F3 | Glycosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011212 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.880981 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.173956 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.961924 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.077402 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.750755 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.176916 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.695324 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.624154 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.502844 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.46664 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.597768 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.540094 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.864633 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.644366 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 25.307611 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.008881 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.430099 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.387053 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.472738 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.874205 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.27627 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.402147 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.136394 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.627351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.317276 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.663104 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.897924 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.706294 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.621058 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.382415 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.676697 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.639419 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.569337 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.030455 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.984072 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.947463 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.568383 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.316189 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.995586 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.329181 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.515512 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.121704 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.09516 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.929349 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.974 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.829179 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.679886 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.38544 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.635917 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.029685 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 11 | jg10954, jg17805, jg17806, jg18732, jg18733, jg18735, jg5662 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_12872, gene_12875, gene_12877, gene_3913, gene_4113 ... |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028967, Ah034989 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20214, Sbi_jg20215, Sbi_jg20227, Sbi_jg44270 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg13519, Seu_jg17747, Seu_jg17751, Seu_jg17758 ... |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00021420, GOSA_00021424, GOSA_00021425 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl63859, Sgl63868, Sgl63869, Sgl63871, Sgl63873, Sgl63874 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010419, gene:ENSEOMG00000020496 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0009580, CQ.Regalona.r1.2AG0009630 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022140 |
| Apiaceae | Apium graveolens | 3 | Ag4G00792, Ag9G00489, Ag9G00490 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G009050, COCNU_01G009060, COCNU_01G009070 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701718, gene-LOC103701719 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2304.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri6G28144, Ftri9G28070 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G10400.1, AT2G16890.2, AT5G14860.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015356m.g.v1.0, Thhalv10022679m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g09010.v2.2, Sp3g30170.v2.2, Sp6g29220.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g013030.2N, BniB02g047970.2N, BniB03g003900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1810 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1886 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10311 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG05.411, evm.TU.LG05.412, evm.TU.LG05.415 ... |
| Plantaginaceae | Plantago ovata | 4 | Pov_00015437, Pov_00023335, Pov_00028289, Pov_00034538 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G04850, Lb4G26160, Lb4G26163 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.1924, BH03.1926 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2AG0123420, gene-QOZ80_6AG0516790 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.5HG0473970.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004550, gene-QYE76_004910, gene-QYE76_004915 |
| Poaceae | Oryza coarctata | 3 | Oco17G002850, Oco18G003850, Oco18G003860 |
| Poaceae | Oryza sativa | 7 | LOC_Os04g24110.1, LOC_Os06g16000.1, LOC_Os09g16030.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G154200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105179, Pt_Chr0403582, Pt_Chr0403583, Pt_Chr0404461 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G010950, Chr11G011460, Chr11G011480, Chr11G018010 |
| Poaceae | Thinopyrum elongatum | 6 | Tel4E01G596200, Tel4E01G596300, Tel5E01G313000 ... |
| Poaceae | Triticum dicoccoides | 13 | gene_TRIDC4BG060850, gene_TRIDC5AG030050 ... |
| Poaceae | Triticum aestivum | 16 | TraesCS4B02G364500.1.cds1, TraesCS5A02G185100.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb098940_P001, Zm00001eb098950_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-19827, nbis-gene-19946, nbis-gene-50372 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29487, Zma_g32474, Zma_g32564 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1665 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g21670, gene.Posoc03g07410 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1863 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2633, nbisL1-mrna-2637 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17630 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3044 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.32 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001589 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21546, nbisL1-mrna-21551 |
| Salicaceae | Populus euphratica | 1 | populus_peu01054 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132621897, gene-LOC132622473, gene-LOC132623103 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002525800, SOLCI005033300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011830, gene-LOC107012951 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10973_chr07_-, gene_5909 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0979 |