halophFGD

Basic Information

Locus ID: Ag4G00759

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Glucose-6-phosphate 1-epimerase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	69751028	69754355	-	Ag4G00759

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.26	33,918.18 Da	35.83	86.16	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09020	D-hex-6-P-epi_like	10	281	1.84885E-116	IPR025532
Pfam	PF01263	Aldose 1-epimerase	10	280	1.1E-57	IPR008183
SUPERFAMILY	SSF74650	Galactose mutarotase-like	11	280	3.33E-67	IPR011013
Gene3D	G3DSA:2.70.98.10	-	5	288	3.3E-94	IPR014718
PIRSF	PIRSF016020	PHexose_mutarotase	1	288	5.4E-64	IPR025532

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0016853 (isomerase activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K01792 (glucose-6-phosphate 1-epimerase [EC:5.1.3.15])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments)

Reaction:

R02739 (alpha-D-Glucose 6-phosphate <=> beta-D-Glucose 6-phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G01590.1	Galactose mutarotase-like superfamily protein.
RefSeq	XP_017237199.1	PREDICTED: putative glucose-6-phosphate 1-epimerase [Daucus carota subsp. sativus]
Swiss-Prot	Q40784	Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1
TrEMBL	A0A162AKN6	glucose-6-phosphate 1-epimerase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011257 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	45.155495	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	25.746077	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	27.793221	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	27.334572	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	28.127653	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.94031	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	21.658043	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	18.357382	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	34.393803	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	35.022015	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	35.092606	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	43.693237	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	38.190193	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	41.960918	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.549978	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.225691	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	19.614384	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	20.168997	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	19.48604	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	21.232775	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	24.297783	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	24.996935	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	23.715696	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	27.942436	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	20.835274	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	22.988588	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	21.680958	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	19.476917	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	23.656197	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	19.589672		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	30.711086		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	24.368513		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	32.71043		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	37.473		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	29.291046		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	25.337915		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	22.870905		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	22.721722		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	23.557341	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	22.14596	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	19.164904	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.49489	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	15.415006	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.577877	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.1166	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	16.942806	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	17.073265	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	40.089436	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	41.884918	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	31.137146	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg17764, jg19863, jg23529, jg26905, jg29420, jg30465, jg4108 ... jg37042, jg40398
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10802, gene_1658, gene_17494, gene_1784
Amaranthaceae	Atriplex hortensis	4	Ah004506, Ah014756, Ah022899, Ah037209
Amaranthaceae	Beta vulgaris	4	BVRB_1g003620, BVRB_5g099470, BVRB_6g143920, BVRB_8g198340
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg23985, Sbi_jg25156, Sbi_jg4010, Sbi_jg42040 ... Sbi_jg48097, Sbi_jg49217, Sbi_jg7809, Sbi_jg8998
Amaranthaceae	Salicornia europaea	4	Seu_jg12219, Seu_jg19594, Seu_jg27458, Seu_jg6023
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000536, GOSA_00001097, GOSA_00007644, GOSA_00008876
Amaranthaceae	Suaeda glauca	9	Sgl10977, Sgl11083, Sgl16376, Sgl31622, Sgl36933, Sgl42434 ... Sgl47163, Sgl52148, Sgl57421
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000002257, gene:ENSEOMG00000002330 ... gene:ENSEOMG00000005453, gene:ENSEOMG00000011572, gene:ENSEOMG00000013687, gene:ENSEOMG00000022220, gene:ENSEOMG00000025677, gene:ENSEOMG00000026701, gene:ENSEOMG00000033199, gene:ENSEOMG00000034610, gene:ENSEOMG00000035617, gene:ENSEOMG00000047870, gene:ENSEOMG00000050224
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0025770, CQ.Regalona.r1.5AG0006350 ... CQ.Regalona.r1.5BG0006630, CQ.Regalona.r1.6AG0011050, CQ.Regalona.r1.8AG0018460, CQ.Regalona.r1.8BG0023920
Anacardiaceae	Pistacia vera	6	pistato.v30005360, pistato.v30023140, pistato.v30130190 ... pistato.v30130800, pistato.v30134940, pistato.v30263090
Apiaceae	Apium graveolens	5	Ag11G05047, Ag3G00877, Ag4G00759, Ag4G02242, Ag8G00602
Arecaceae	Cocos nucifera	6	COCNU_01G008410, COCNU_02G018700, COCNU_06G003200 ... COCNU_11G009560, COCNU_11G012890, COCNU_14G001820
Arecaceae	Phoenix dactylifera	3	gene-LOC103701526, gene-LOC103707075, gene-LOC103708356
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.54.V1.1, AsparagusV1_05.2441.V1.1 ... AsparagusV1_05.2716.V1.1, AsparagusV1_05.3499.V1.1
Asteraceae	Flaveria trinervia	10	Ftri11G23872, Ftri13G04076, Ftri14G27108, Ftri15G03410 ... Ftri15G08299, Ftri15G32552, Ftri18G05830, Ftri3G26990, Ftri4G01046, Ftri8G09870
Brassicaceae	Arabidopsis thaliana	6	AT3G01590.2, AT3G61610.1, AT4G23730.1, AT4G25900.1 ... AT5G14500.1, AT5G57330.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10006104m.g.v1.0, Thhalv10014164m.g.v1.0 ... Thhalv10014200m.g.v1.0, Thhalv10021199m.g.v1.0, Thhalv10025755m.g.v1.0, Thhalv10025817m.g.v1.0, Thhalv10026020m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp3g00460.v2.2, Sp5g01800.v2.2, Sp6g19050.v2.2 ... Sp6g29510.v2.2, Sp7g21670.v2.2, Sp7g23920.v2.2
Brassicaceae	Brassica nigra	13	BniB02g036680.2N, BniB02g080720.2N, BniB03g012620.2N ... BniB05g001850.2N, BniB05g011480.2N, BniB05g013440.2N, BniB05g036900.2N, BniB06g053080.2N, BniB07g035180.2N, BniB08g006990.2N, BniB08g013860.2N, BniB08g075750.2N, BniB08g075880.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1223, Ceq02G1896, Ceq03G0219, Ceq03G1110, Ceq05G0650
Casuarinaceae	Casuarina glauca	5	Cgl02G1263, Cgl02G1973, Cgl03G0260, Cgl03G1202, Cgl05G0663
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno02g12790, gene.Cymno04g01270, gene.Cymno06g06760 ... gene.Cymno07g04830, gene.Cymno07g12540, gene.Cymno08g00890
Dunaliellaceae	Dunaliella salina	1	Dusal.0115s00012.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate02g25640, gene.Thate03g22510, gene.Thate04g22680 ... gene.Thate05g05800, gene.Thate07g16140, gene.Thate09g00630
Malvaceae	Hibiscus hamabo Siebold & Zucc.	7	nbisL1-mrna-11219, nbisL1-mrna-2269, nbisL1-mrna-2448 ... nbisL1-mrna-2461, nbisL1-mrna-3364, nbisL1-mrna-4654, nbisL1-mrna-846
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.702, evm.TU.LG04.760, evm.TU.LG05.282 ... evm.TU.LG07.64, evm.TU.LG10.1491
Plantaginaceae	Plantago ovata	3	Pov_00017331, Pov_00024178, Pov_00028419
Plumbaginaceae	Limonium bicolor	3	Lb2G11199, Lb2G11201, Lb3G17122
Poaceae	Echinochloa crus-galli	15	AH02.2597, AH05.1339, AH07.549, AH08.802, AH09.2203 ... BH02.2698, BH05.1510, BH07.675, BH08.847, BH09.2374, CH02.3840, CH05.1710, CH07.555, CH08.935, CH09.2522
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0027240, gene-QOZ80_1BG0077440 ... gene-QOZ80_2AG0103460, gene-QOZ80_2BG0156770, gene-QOZ80_4AG0300970, gene-QOZ80_4BG0331710, gene-QOZ80_5AG0362590, gene-QOZ80_5BG0410760, gene-QOZ80_8AG0623500, gene-QOZ80_8BG0651730
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0090330.1, HORVU.MOREX.r3.2HG0193070.1 ... HORVU.MOREX.r3.2HG0202520.1, HORVU.MOREX.r3.6HG0570230.1, HORVU.MOREX.r3.7HG0694820.1
Poaceae	Lolium multiflorum	5	gene-QYE76_020917, gene-QYE76_021009, gene-QYE76_032393 ... gene-QYE76_046126, gene-QYE76_047045
Poaceae	Oryza coarctata	11	Oco01G016250, Oco02G016480, Oco03G003840, Oco04G003770 ... Oco07G015140, Oco07G017960, Oco08G014640, Oco08G017330, Oco09G017130, Oco15G004790, Oco16G004490
Poaceae	Oryza sativa	6	LOC_Os01g46950.1, LOC_Os02g08030.1, LOC_Os04g51390.1 ... LOC_Os04g56290.1, LOC_Os05g49430.1, LOC_Os08g14330.2
Poaceae	Paspalum vaginatum	5	gene-BS78_03G217600, gene-BS78_04G056900 ... gene-BS78_06G266200, gene-BS78_07G093400, gene-BS78_09G241300
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0202364, Pt_Chr0300545, Pt_Chr0300567, Pt_Chr0301411 ... Pt_Chr0402618, Pt_Chr0502948, Pt_Chr0505610
Poaceae	Sporobolus alterniflorus	13	Chr02G013830, Chr03G012190, Chr08G012470, Chr0G027820 ... Chr16G003170, Chr17G002750, Chr18G016610, Chr20G009600, Chr22G000860, Chr25G001600, Chr26G017300, Chr29G009300, Chr30G001600
Poaceae	Thinopyrum elongatum	5	Tel1E01G677700, Tel2E01G738700, Tel2E01G848400 ... Tel6E01G312700, Tel7E01G496900
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG060350, gene_TRIDC1BG069110 ... gene_TRIDC2AG062850, gene_TRIDC2AG070530, gene_TRIDC2BG066560, gene_TRIDC2BG076260, gene_TRIDC6AG021140, gene_TRIDC6BG027030, gene_TRIDC7AG040040, gene_TRIDC7BG030250
Poaceae	Triticum aestivum	15	TraesCS1A02G409900.1, TraesCS1B02G439900.1 ... TraesCS1D02G417300.1, TraesCS2A02G437100.1, TraesCS2A02G501600.1, TraesCS2B02G456200.2, TraesCS2B02G529800.1, TraesCS2D02G432900.1, TraesCS2D02G502100.1, TraesCS6A02G152400.1, TraesCS6B02G180500.1, TraesCS6D02G142200.1, TraesCS7A02G288900.1, TraesCS7B02G185300.2, TraesCS7D02G292700.1
Poaceae	Zea mays	6	Zm00001eb067700_P001, Zm00001eb157870_P002 ... Zm00001eb178250_P001, Zm00001eb206840_P001, Zm00001eb296350_P001, Zm00001eb414550_P001
Poaceae	Zoysia japonica	5	nbis-gene-13617, nbis-gene-23081, nbis-gene-24814 ... nbis-gene-25972, nbis-gene-53679
Poaceae	Zoysia macrostachya	9	Zma_g10795, Zma_g15044, Zma_g20598, Zma_g21920, Zma_g22131 ... Zma_g22682, Zma_g23820, Zma_g27410, Zma_g28830
Portulacaceae	Portulaca oleracea	10	evm.TU.LG02.2725, evm.TU.LG04.2204, evm.TU.LG04.3306 ... evm.TU.LG06.102, evm.TU.LG10.428, evm.TU.LG16.294, evm.TU.LG17.425, evm.TU.LG19.1237, evm.TU.LG23.935, evm.TU.LG24.1253
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g06820, gene.Posoc03g14570, gene.Posoc05g02650 ... gene.Posoc08g14060
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.285, evm.TU.Scaffold_14_RagTag.133 ... evm.TU.Scaffold_16_RagTag.111, evm.TU.Scaffold_3_RagTag.1935, evm.TU.Scaffold_4_RagTag.2032, evm.TU.Scaffold_9_RagTag.574
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-13282, nbisL1-mrna-21692, nbisL1-mrna-22356 ... nbisL1-mrna-2413, nbisL1-mrna-25457, nbisL1-mrna-2562
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12605, nbisL1-mrna-2883, nbisL1-mrna-3684 ... nbisL1-mrna-4395, nbisL1-mrna-6777, nbisL1-mrna-7821
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-20371, nbisL1-mrna-3099, nbisL1-mrna-7375 ... nbisL1-mrna-8599
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.226, evm.TU.utg000007l.315 ... evm.TU.utg000008l.1180, evm.TU.utg000019l.57, evm.TU.utg000022l.425, evm.TU.utg000033l.190
Rhizophoraceae	Kandelia obovata	6	Maker00000166, Maker00001698, Maker00014237, Maker00014683 ... Maker00017734, Maker00018456
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12027, nbisL1-mrna-14251, nbisL1-mrna-15988 ... nbisL1-mrna-16579, nbisL1-mrna-1723, nbisL1-mrna-3566
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-10961, nbisL1-mrna-14670, nbisL1-mrna-19580 ... nbisL1-mrna-20973, nbisL1-mrna-5466, nbisL1-mrna-6735
Salicaceae	Populus euphratica	9	populus_peu01108, populus_peu03647, populus_peu04154 ... populus_peu05287, populus_peu05290, populus_peu05360, populus_peu05414, populus_peu31596, populus_peu34983
Solanaceae	Lycium barbarum	4	gene-LOC132603372, gene-LOC132621580, gene-LOC132634823 ... gene-LOC132645490
Solanaceae	Solanum chilense	5	SOLCI002687600, SOLCI003540000, SOLCI003906500 ... SOLCI004254000, SOLCI005351200
Solanaceae	Solanum pennellii	5	gene-LOC107007926, gene-LOC107008938, gene-LOC107026328 ... gene-LOC107028741, gene-LOC107032365
Tamaricaceae	Reaumuria soongarica	6	STRG.14720_chr08_+, STRG.23275_chr05_+, STRG.23368_chr05_- ... gene_1385, gene_15202, gene_928
Tamaricaceae	Tamarix chinensis	7	TC01G3563, TC01G4242, TC03G1004, TC03G2157, TC09G2300 ... TC10G0828, TC12G0488
Zosteraceae	Zostera marina	6	Zosma02g11490.v3.1, Zosma02g22810.v3.1, Zosma03g00510.v3.1 ... Zosma03g18980.v3.1, Zosma04g00930.v3.1, Zosma04g06810.v3.1