Basic Information
Locus ID:
Ag4G00732
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 65828994 | 65831771 | - | Ag4G00732 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 77,191.26 Da | 31.16 | 86.18 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 405 | 434 | 0.39 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 156 | 209 | 2.9E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 126 | 148 | 0.0089 | IPR002885 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 448 | 600 | 9.4E-14 | IPR033443 |
| SUPERFAMILY | SSF48452 | TPR-like | 363 | 536 | 3.37E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 488 | 659 | 9.5E-29 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 62 | 268 | 1.0E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 405 | 487 | 1.7E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 281 | 404 | 5.4E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 474 | 507 | 1.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 200 | 233 | 2.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 544 | 578 | 6.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 441 | 472 | 2.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 126 | 148 | 0.0027 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 166 | 199 | 8.7E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 163 | 197 | 10.89559 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | 8.900633 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 542 | 576 | 10.577712 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 472 | 506 | 11.388848 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 437 | 471 | 9.722731 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 198 | 232 | 10.928473 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46610.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_017242568.1 | PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Daucus carota subsp. sativus] | 0 |
| Q9SNB7 | Protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161WUX4 | PPR_long domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011279 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.949018 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.726895 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.328029 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.080204 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.746857 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.506853 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.121043 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.742441 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.425495 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.568985 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.623764 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.080601 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.941923 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.286856 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.792901 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.491911 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.102949 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.254237 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.403319 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.973872 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.95754 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.01548 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.485891 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.816454 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.014766 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.012526 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.50946 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.802158 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.926829 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.155861 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 35.787045 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 28.028381 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 19.794462 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.320747 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.032202 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.760668 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 20.933451 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.398979 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 38.63839 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 51.3545 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 48.212879 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.443527 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.01683 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.952837 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.458349 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.899508 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.945918 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.281341 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.353501 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.642788 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40424 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033485 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20796, Sbi_jg22972 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16838 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009313 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62017, Sgl66577 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017802, gene:ENSEOMG00000050375 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0011360, CQ.Regalona.r1.2BG0012800 |
| Apiaceae | Apium graveolens | 1 | Ag4G00732 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G013270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720303 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1240.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G07846 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G46610.1, AT5G14350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015672m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1931 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g00370 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g23380 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.226 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013537 |
| Poaceae | Echinochloa crus-galli | 1 | AH05.3235 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0387480, gene-QOZ80_5BG0434960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0304630.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020125, gene-QYE76_020148 |
| Poaceae | Oryza coarctata | 1 | Oco24G004500 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g18640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G152400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr19G014360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G618700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055680, gene_TRIDC3BG062340 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G390700.1.cds1, TraesCS3B02G422500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb273000_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12429 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25711 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1426 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g01540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14873 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-589 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.16 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007091 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21510 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17529 |
| Salicaceae | Populus euphratica | 2 | populus_peu01148, populus_peu24410 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621413 |
| Solanaceae | Solanum chilense | 1 | SOLCI000010500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011328 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25692_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1277 |
| Zosteraceae | Zostera marina | 1 | Zosma02g09460.v3.1 |