halophFGD

Basic Information

Locus ID: Ag4G00719

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: heme protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	63490556	63495288	+	Ag4G00719

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.20	33,880.22 Da	42.26	81.55	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02167	Cytochrome C1 family	81	297	4.5E-97	IPR002326
SUPERFAMILY	SSF46626	Cytochrome c	74	264	1.29E-72	IPR036909
SUPERFAMILY	SSF81496	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor	265	309	1.31E-12	IPR021157
Gene3D	G3DSA:1.20.5.100	-	266	309	7.3E-17	-
Gene3D	G3DSA:1.10.760.10	-	70	265	2.1E-91	IPR036909
ProSiteProfiles	PS51007	Cytochrome c family profile.	93	263	7.249731	IPR009056
PRINTS	PR00603	Cytochrome C1 signature	265	280	6.8E-78	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	226	245	6.8E-78	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	79	98	6.8E-78	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	246	265	6.8E-78	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	177	201	6.8E-78	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	99	118	6.8E-78	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	215	226	6.8E-78	IPR002326
PRINTS	PR00603	Cytochrome C1 signature	144	164	6.8E-78	IPR002326

Gene Ontology

Molecular Function:

GO:0009055 (electron transfer activity) GO:0020037 (heme binding)

KEGG Pathway

KO Term:

K00413 (ubiquinol-cytochrome c reductase cytochrome c1 subunit)

Pathway:

ko00190 (Oxidative phosphorylation) map00190 (Oxidative phosphorylation) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko02020 (Two-component system) map02020 (Two-component system)

Module:

M00151 (Cytochrome bc1 complex respiratory unit) M00152 (Cytochrome bc1 complex)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G40810.1	Cytochrome C1 family.
RefSeq	XP_017242710.1	PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Daucus carota subsp. sativus]
Swiss-Prot	Q9FKS5	Cytochrome c1 2, heme protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CYC1-2 PE=1 SV=1
TrEMBL	A0A166BA12	Cytochrome c domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011303 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	123.571716	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	125.734848	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	110.417343	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	113.247673	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	110.782829	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	89.392578	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	74.140335	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	55.275078	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	208.659088	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	198.871597	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	195.368073	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	198.272141	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	218.195129	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	224.648087	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	235.178421	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	233.398178	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	236.231857	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	318.890015	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	286.135864	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	294.257416	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	328.218353	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	243.237335	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	262.796722	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	261.378387	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	241.096237	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	331.168213	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	310.810516	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	270.661682	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	297.046539	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	360.328217		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	342.329498		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	365.100098		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	555.185181		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	299.329102		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	427.551086		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	777.667786		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	508.622498		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	686.613037		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	169.723999	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	213.753159	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	236.602921	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	343.22934	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	407.837799	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	490.39151	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	387.849945	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	353.409027	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	354.107147	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	179.670563	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	172.520569	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	158.090561	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17711, jg25396, jg27178, jg40446
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19548, gene_21375
Amaranthaceae	Atriplex hortensis	2	Ah001165, Ah010635
Amaranthaceae	Beta vulgaris	1	BVRB_5g116480
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg30484, Sbi_jg46453, Sbi_jg58767
Amaranthaceae	Salicornia europaea	2	Seu_jg20769, Seu_jg28640
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005224, GOSA_00014990
Amaranthaceae	Suaeda glauca	5	Sgl55277, Sgl55974, Sgl60541, Sgl60543, Sgl61146
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000004851, gene:ENSEOMG00000021319 ... gene:ENSEOMG00000024600, gene:ENSEOMG00000038583, gene:ENSEOMG00000051041
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0022290, CQ.Regalona.r1.5BG0023700 ... CQ.Regalona.r1.7BG0010350, CQ.Regalona.r1.9AG0014280
Anacardiaceae	Pistacia vera	5	pistato.v30023980, pistato.v30115950, pistato.v30115980 ... pistato.v30126760, pistato.v30127610
Apiaceae	Apium graveolens	2	Ag4G00719, Ag9G00421
Arecaceae	Cocos nucifera	3	COCNU_08G009680, COCNU_08G009840, COCNU_08G011570
Arecaceae	Phoenix dactylifera	10	gene-LOC103698836, gene-LOC103699919, gene-LOC103700669 ... gene-LOC103706947, gene-LOC103722276, gene-LOC103722292, gene-LOC113461592, gene-LOC120105508, gene-LOC120111415, gene-LOC120113009
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.157.V1.1, AsparagusV1_05.3210.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G27774, Ftri1G24212, Ftri1G25190, Ftri6G27416
Brassicaceae	Arabidopsis thaliana	2	AT3G27240.1, AT5G40810.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004628m.g.v1.0, Thhalv10027856m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g16370.v2.2, Sp7g01100.v2.2
Brassicaceae	Brassica nigra	4	BniB01g025670.2N, BniB02g067400.2N, BniB04g007420.2N ... BniB07g035800.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G1971
Casuarinaceae	Casuarina glauca	1	Cgl02G2044
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g12390, gene.Cymno08g01000
Dunaliellaceae	Dunaliella salina	1	Dusal.0291s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g09240
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2290, nbisL1-mrna-5534
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.433, evm.TU.LG05.183
Plantaginaceae	Plantago ovata	2	Pov_00015457, Pov_00027793
Plumbaginaceae	Limonium bicolor	2	Lb2G11929, Lb2G14520
Poaceae	Echinochloa crus-galli	6	AH02.4443, AH08.2361, BH02.4482, BH08.2518, CH02.4529 ... CH08.2700
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0045850, gene-QOZ80_1BG0095820 ... gene-QOZ80_8AG0640480, gene-QOZ80_8BG0669070
Poaceae	Lolium multiflorum	1	gene-QYE76_030689
Poaceae	Oryza coarctata	4	Oco01G029430, Oco02G030620, Oco09G005740, Oco09G005750
Poaceae	Oryza sativa	2	LOC_Os01g70960.1, LOC_Os05g23620.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G396300, gene-BS78_07G225200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403389
Poaceae	Sporobolus alterniflorus	7	Chr02G001510, Chr05G032930, Chr05G033040, Chr20G003180 ... Chr20G003190, Chr29G000450, Chr29G000460
Poaceae	Thinopyrum elongatum	2	Tel3E01G725300, Tel7E01G480500
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG064740, gene_TRIDC3BG073120 ... gene_TRIDC7AG036540, gene_TRIDC7BG027720
Poaceae	Triticum aestivum	5	TraesCS3A02G458200.1, TraesCS3D02G451000.1 ... TraesCS7A02G278100.1, TraesCS7B02G175500.1, TraesCS7D02G277900.1
Poaceae	Zea mays	2	Zm00001eb039620_P001, Zm00001eb176210_P001
Poaceae	Zoysia japonica	3	nbis-gene-17645, nbis-gene-28219, nbis-gene-42860
Poaceae	Zoysia macrostachya	3	Zma_g11890, Zma_g23427, Zma_g24519
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2527, evm.TU.LG14.1667
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g06630, gene.Posoc03g22430, gene.Posoc04g09310 ... gene.Posoc05g03010, gene.Posoc07g15540, gene.Posoc09g02070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1215, evm.TU.Scaffold_6_RagTag.91 ... evm.TU.Scaffold_3_RagTag.2001
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-14903
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-6807, nbisL1-mrna-826
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-82
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000019l.12, evm.TU.utg000011l.65
Rhizophoraceae	Kandelia obovata	2	Maker00001603, Maker00007234
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11910, nbisL1-mrna-11987
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-17498
Salicaceae	Populus euphratica	2	populus_peu08441, populus_peu36909
Solanaceae	Lycium barbarum	5	gene-LOC132598606, gene-LOC132603665, gene-LOC132622628 ... gene-LOC132631194, gene-LOC132635308
Solanaceae	Solanum chilense	3	SOLCI000007600, SOLCI004752500, SOLCI006740600
Solanaceae	Solanum pennellii	3	gene-LOC107007360, gene-LOC107011068, gene-LOC107023559
Tamaricaceae	Reaumuria soongarica	2	STRG.13892_chr05_-, gene_2311
Tamaricaceae	Tamarix chinensis	2	TC01G3504, TC03G1333
Zosteraceae	Zostera marina	2	Zosma01g34250.v3.1, Zosma05g01820.v3.1