Basic Information
Locus ID:
Ag4G00703
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 59339679 | 59342295 | + | Ag4G00703 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 18,255.48 Da | 24.99 | 123.04 | 0.42 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16660.1 | heat shock protein 70 (Hsp 70) family protein. | 0 |
| RefSeq | XP_017219807.1 | PREDICTED: protein DETOXIFICATION 44, chloroplastic [Daucus carota subsp. sativus] | 0 |
| F4JMJ1 | Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana OX=3702 GN=HSP70-17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164SZE9 | Protein DETOXIFICATION OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023999 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.912369 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.181023 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.030373 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.024591 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.672554 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.995298 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.07065 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.666962 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.885239 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.189115 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.343385 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.563877 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.778806 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.945301 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.684674 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.175333 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.086012 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.989973 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.046813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.69775 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.910507 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.289448 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.940885 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.58258 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.490749 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.957977 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.366313 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.746366 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.783391 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.71302 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24110 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13423 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000054 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g122530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31242, Sbi_jg58024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25658 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004528, GOSA_00004529 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54595, Sgl59929 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004347, gene:ENSEOMG00000020016 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027480, CQ.Regalona.r1.5BG0029100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30279880 |
| Apiaceae | Apium graveolens | 3 | Ag3G00572, Ag4G00703, Ag4G02128 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G009480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701937 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.2476.V1.1, AsparagusV1_03.2657.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G05419, Ftri3G08320 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G16660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024376m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g15270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g073050.2N, BniB05g019630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2961 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3075 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00120 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0079s00021.v1.0, Dusal.0079s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g01850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3697 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1856 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001316 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13402, Lb5G28139 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3186, BH07.3018, CH07.3094 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0143020, gene-QOZ80_2BG0198410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0608780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024227, gene-QYE76_024743 |
| Poaceae | Oryza coarctata | 1 | Oco03G019600 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g48110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G251200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203652, Pt_Chr0206883 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G003890, Chr09G021950 |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G347600, Tel3E01G465100, Tel3E01G911900 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG020050, gene_TRIDC6AG042320 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1B02G206700.1, TraesCS6A02G276700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb188700_P002, Zm00001eb188750_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22061, nbis-gene-8945 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14259, Zma_g17004 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1301, evm.TU.LG09.673 |
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc01g01670, gene.Posoc01g35940, gene.Posoc02g02840 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1534, evm.TU.Scaffold_8_RagTag.266 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19942 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13660, nbisL1-mrna-19352 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13469 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.159, evm.TU.utg000018l.818 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011958 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13149 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12227 |
| Salicaceae | Populus euphratica | 2 | populus_peu10701, populus_peu26414 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617909 |
| Solanaceae | Solanum chilense | 1 | SOLCI002825700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026092 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17579_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2802 |
| Zosteraceae | Zostera marina | 1 | Zosma06g21400.v3.1 |