Basic Information
Locus ID:
Ag4G00684
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Universal stress protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 56021757 | 56025124 | - | Ag4G00684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 22,950.15 Da | 43.25 | 93.19 | -0.29 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48960.1 | Adenine nucleotide alpha hydrolases-like superfamily protein. | 0 |
| RefSeq | XP_017239155.1 | PREDICTED: uncharacterized protein LOC108211946 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162AKT8 | Usp domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.302019 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.616826 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.386336 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.375028 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.316725 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.474374 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.476855 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.564507 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.456936 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.916082 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.861587 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.204166 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.513482 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.13798 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.310629 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.741697 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.104577 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.494332 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.38778 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.176214 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.585117 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.207661 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.925457 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.102249 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.263558 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.487104 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.633877 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.362789 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.49899 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.194745 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.726075 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.390012 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.693837 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.015384 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.834074 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.479888 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.547636 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.612422 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.261231 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.422132 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.658559 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 145.558685 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 119.249161 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 31.859917 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.069893 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 139.247986 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 62.364693 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.360168 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.612598 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.790606 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27353 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19739 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001387 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg30908 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28251 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004830 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54915, Sgl60170 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005113, gene:ENSEOMG00000022438 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0019780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30145990 |
| Apiaceae | Apium graveolens | 1 | Ag4G00684 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G009760 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701948 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2825.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17129, Ftri9G18976 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G48960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011768m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g35870.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g006910.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2381 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11845 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.436 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022860 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36664 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.1145, BH02.960, BH07.1244, CH02.1071 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006910, gene-QOZ80_1BG0055610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0219180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049488 |
| Poaceae | Oryza coarctata | 2 | Oco01G000520, Oco02G000610 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G091000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206565, Pt_Chr0207301 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G025100, Chr03G002960, Chr05G002870, Chr08G002080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G012200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG002290, gene_TRIDC3BG001170 |
| Poaceae | Triticum aestivum | 3 | TraesCS3B02G007900.1, TraesCS3B02G010600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7158 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9833 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.124, evm.TU.LG09.1360 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g04790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.171 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14277 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10031 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.275 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010089 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-315 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19056 |
| Salicaceae | Populus euphratica | 2 | populus_peu05257, populus_peu29785 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600076, gene-LOC132633306 |
| Solanaceae | Solanum chilense | 2 | SOLCI005214600, SOLCI006255600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013040, gene-LOC107022831 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.14321_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0805 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06850.v3.1 |