Basic Information
Locus ID:
Ag4G00637
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
CDKD-1
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 42808896 | 42816225 | + | Ag4G00637 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 47,282.04 Da | 38.76 | 82.02 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07841 | STKc_CDK7 | 16 | 310 | 0.0 | IPR037770 |
| Pfam | PF00069 | Protein kinase domain | 19 | 297 | 7.7E-71 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 11 | 303 | 2.93E-95 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 98 | 313 | 2.4E-66 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 97 | 1.4E-30 | - |
| SMART | SM00220 | serkin_6 | 17 | 297 | 1.7E-94 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 17 | 297 | 44.385719 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 135 | 147 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 23 | 52 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 351 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18040.1 | cyclin-dependent kinase D1;3. | 0 |
| RefSeq | XP_017242321.1 | PREDICTED: cyclin-dependent kinase D-3-like [Daucus carota subsp. sativus] | 0 |
| P29620 | Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKD-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161WV94 | [RNA-polymerase]-subunit kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011379 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.102865 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.959149 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.471731 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.827311 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.095827 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.159211 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.928593 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.844367 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.759073 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.570168 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.867353 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.051346 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.175138 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.817131 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.129183 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.358271 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.861763 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.237495 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.157155 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.908704 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.146544 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 24.979937 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.834452 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.013218 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.613157 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.350487 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.268274 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.94421 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.412989 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.813774 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.536944 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.291826 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.751442 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.995164 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.837815 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.582358 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.233978 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.664273 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.889598 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.279613 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.623035 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.703841 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.189837 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 24.546556 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.767908 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.796566 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.48428 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.262516 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.078707 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.974058 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26997 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6435 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016004 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19512, Sbi_jg44072 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17893 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019288 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53827, Sgl59092 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006791, gene:ENSEOMG00000022355 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014920, CQ.Regalona.r1.5BG0016110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150480 |
| Apiaceae | Apium graveolens | 1 | Ag4G00637 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G016930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712337 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1796.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G32878, Ftri9G01380 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18040.1, AT1G66750.1, AT1G73690.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007847m.g.v1.0, Thhalv10018665m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g16070.v2.2, Sp5g21710.v2.2, Sp5g28870.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g035090.2N, BniB03g007410.2N, BniB03g027880.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1420 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1579 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g05040, gene.Cymno05g05370 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0447s00007.v1.0, Dusal.0447s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1767 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016089, Pov_00033231 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29912 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2595, BH05.2678, CH05.2768 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374480, gene-QOZ80_5BG0421840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0064460.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013492, gene-QYE76_013493, gene-QYE76_013677 |
| Poaceae | Oryza coarctata | 2 | Oco09G008780, Oco10G008930 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G133200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505125 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G021210, Chr12G016720, Chr18G008390, Chr22G009250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G405800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036920, gene_TRIDC1BG041920 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G245600.1, TraesCS1B02G256600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287310_P002, Zm00001eb350890_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14535, nbis-gene-23745 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26801, Zma_g28182 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2256, evm.TU.LG14.1428 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11270 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60406.3, evm.TU.Scaffold_11_RagTag.635 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14309, nbisL1-mrna-14310, nbisL1-mrna-22776 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4305 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12324 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008813 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-952 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8384 |
| Salicaceae | Populus euphratica | 2 | populus_peu27747, populus_peu29742 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634883 |
| Solanaceae | Solanum chilense | 1 | SOLCI002361100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026856 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2332 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1114 |
| Zosteraceae | Zostera marina | 1 | Zosma02g25660.v3.1 |