Basic Information
Locus ID:
Ag4G00628
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 40437760 | 40444028 | - | Ag4G00628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 41,827.93 Da | 28.47 | 115.53 | 0.51 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73650.5 | - | 0 |
| RefSeq | XP_017237457.1 | PREDICTED: uncharacterized protein LOC108210606 isoform X3 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A0B0MRS7 | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Gossypium arboreum OX=29729 GN=F383_28029 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.358711 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.969633 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 25.215517 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.215179 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.310637 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.361984 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.668051 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.402745 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 91.214043 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 87.778801 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 88.702011 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 81.979668 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 81.482101 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 64.492546 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 65.726547 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 58.267208 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 67.56179 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 70.456787 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 63.448402 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 58.043396 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 59.420952 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 54.780102 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 60.52858 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 75.779968 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 61.058769 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 75.58947 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 70.392883 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 66.935188 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 67.670059 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 32.186829 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 64.715538 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 58.289169 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 30.731453 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 39.868835 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.512224 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.487024 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 26.822243 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 25.497864 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 39.04591 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 50.064545 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 81.5541 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 48.50478 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 48.758156 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 30.317852 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 28.421762 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 54.312977 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 25.553179 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 63.915619 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 68.986465 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 68.58474 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27009, jg6820 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22230 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018065 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g182850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26021, Sbi_jg9870 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18847 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017063 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45961, Sgl50659 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010480, gene:ENSEOMG00000032034 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005510, CQ.Regalona.r1.8BG0005690 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30150070, pistato.v30292140 |
| Apiaceae | Apium graveolens | 1 | Ag4G00628 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G008130, COCNU_03G008480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701854, gene-LOC103721395 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G30774 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18180.1, AT1G73650.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008683m.g.v1.0, Thhalv10018948m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g16160.v2.2, Sp5g28820.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g051990.2N, BniB04g032630.2N, BniB05g070770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2841 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2994 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g09000 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0254s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.102 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033258 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16547 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.876, BH01.1018, CH01.1066 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219410, gene-QOZ80_3BG0264680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062855 |
| Poaceae | Oryza coarctata | 2 | Oco05G021410, Oco06G022210 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G109200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104777, Pt_Chr0104778, Pt_Chr0502649 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G007270, Chr07G025790, Chr12G030190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G079200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG042130, gene_TRIDC4BG006830 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G270500.1, TraesCS4B02G043600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb216550_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14796, nbis-gene-15896 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2971, Zma_g664 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.40, evm.TU.LG04.707 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.704 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14382, nbisL1-mrna-28655 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4770 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1661 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.454 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000523, Maker00008907 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14448 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1664 |
| Salicaceae | Populus euphratica | 2 | populus_peu28271, populus_peu28324 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599845, gene-LOC132633215 |
| Solanaceae | Solanum chilense | 2 | SOLCI000422600, SOLCI006090500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015431, gene-LOC107023128 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12646 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1013, TC05G1019 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16930.v3.1 |