halophFGD

Basic Information

Locus ID: Ag4G00571

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Zinc-binding domain, present in Dystrophin, CREB-binding protein.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	23331363	23332770	-	Ag4G00571

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.49	41,473.90 Da	43.83	58.03	-0.47

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03107	C1 domain	85	133	1.6E-13	IPR004146
Pfam	PF03107	C1 domain	143	190	2.7E-8	IPR004146
Pfam	PF03107	C1 domain	14	75	9.6E-8	IPR004146
SUPERFAMILY	SSF57889	Cysteine-rich domain	58	141	9.94E-22	-
Gene3D	G3DSA:3.30.60.90	-	102	151	4.1E-5	IPR043145

Best hit

Source	Best Hit ID	Description
TAIR	AT2G27660.1	Cysteine/Histidine-rich C1 domain family protein.
RefSeq	XP_017246820.1	PREDICTED: uncharacterized protein LOC108218407 [Daucus carota subsp. sativus]
TrEMBL	A0A165WKU6	Phorbol-ester/DAG-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015171 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.076373	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.937723	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.476344	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.312843	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.23161	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.195496	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.169378	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.319492	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.345947	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.370413	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.268005	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.727478	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.381986	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.163507	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.043424	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.33664	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.043012	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.683164	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.267924	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.358546	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.065697	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.531407	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.138141	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.060391		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.737241		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.164988		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.093592		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.030913		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.059597	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.579172	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.406942	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.030425	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.045548	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.371153	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.058629	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.261399	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.153134	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	16	jg1658, jg1662, jg18409, jg19166, jg25570, jg27056, jg27059 ... jg29072, jg29073, jg3327, jg3335, jg3337, jg4411, jg4412, jg4413, jg4414
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10865, gene_26544
Amaranthaceae	Atriplex hortensis	10	Ah009989, Ah014872, Ah014873, Ah014875, Ah014876, Ah014881 ... Ah014882, Ah014883, Ah014884, Ah039468
Amaranthaceae	Beta vulgaris	4	BVRB_4g086530, BVRB_8g191970, BVRB_8g191990, BVRB_9g224010
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19244, Sbi_jg24806, Sbi_jg37657, Sbi_jg8674
Amaranthaceae	Salicornia europaea	4	Seu_jg19934, Seu_jg4541, Seu_jg4542, Seu_jg5498
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005517, GOSA_00005518, GOSA_00022248
Amaranthaceae	Suaeda glauca	12	Sgl14904, Sgl20078, Sgl23251, Sgl28321, Sgl28409, Sgl42529 ... Sgl47258, Sgl47289, Sgl55675, Sgl55676, Sgl60893, Sgl60894
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000008298, gene:ENSEOMG00000009674 ... gene:ENSEOMG00000010787, gene:ENSEOMG00000017240, gene:ENSEOMG00000028822, gene:ENSEOMG00000031708, gene:ENSEOMG00000034079, gene:ENSEOMG00000038129, gene:ENSEOMG00000040163, gene:ENSEOMG00000044882, gene:ENSEOMG00000045175, gene:ENSEOMG00000046549, gene:ENSEOMG00000051970, gene:ENSEOMG00000052431
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.7BG0005350, CQ.Regalona.r1.7BG0005360 ... CQ.Regalona.r1.8AG0017470, CQ.Regalona.r1.8AG0017480, CQ.Regalona.r1.8AG0017490, CQ.Regalona.r1.8BG0018510, CQ.Regalona.r1.8BG0018530, CQ.Regalona.r1.8BG0018540, CQ.Regalona.r1.8BG0018550, CQ.Regalona.r1.8BG0018560, CQ.Regalona.r1.9AG0019140, CQ.Regalona.r1.9AG0019150
Anacardiaceae	Pistacia vera	5	pistato.v30270040, pistato.v30278570, pistato.v30284640 ... pistato.v30284660, pistato.v30287000
Apiaceae	Apium graveolens	20	Ag10G00389, Ag10G00391, Ag10G00392, Ag10G00399, Ag10G00421 ... Ag10G02578, Ag1G00334, Ag1G00335, Ag1G00336, Ag1G00338, Ag2G01450, Ag2G01456, Ag2G01457, Ag2G01458, Ag3G00980, Ag3G01471, Ag3G01883, Ag4G00571, Ag5G02612, Ag8G01457
Arecaceae	Cocos nucifera	1	COCNU_13G001440
Arecaceae	Phoenix dactylifera	1	gene-LOC103705770
Asteraceae	Flaveria trinervia	19	Ftri10G16841, Ftri10G16860, Ftri11G13890, Ftri11G17039 ... Ftri11G28579, Ftri12G03308, Ftri15G12588, Ftri18G17072, Ftri18G26964, Ftri3G16366, Ftri5G04321, Ftri5G14126, Ftri5G14735, Ftri5G17650, Ftri5G20353, Ftri5G24060, Ftri7G10464, Ftri7G33100, Ftri8G19319
Brassicaceae	Arabidopsis thaliana	14	AT2G17740.1, AT2G27660.1, AT2G28270.1, AT2G37780.1 ... AT2G37800.1, AT2G37810.1, AT2G37820.1, AT2G42060.1, AT2G44370.1, AT2G44380.1, AT2G44390.1, AT2G44400.1, AT5G40590.1, AT5G43520.1
Brassicaceae	Eutrema salsugineum	11	Thhalv10001601m.g.v1.0, Thhalv10001796m.g.v1.0 ... Thhalv10002650m.g.v1.0, Thhalv10016319m.g.v1.0, Thhalv10017138m.g.v1.0, Thhalv10017531m.g.v1.0, Thhalv10017725m.g.v1.0, Thhalv10017799m.g.v1.0, Thhalv10017859m.g.v1.0, Thhalv10017974m.g.v1.0, Thhalv10023934m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp4g10440.v2.2, Sp4g20150.v2.2, Sp4g24270.v2.2 ... Sp4g26430.v2.2, Sp4g26440.v2.2, Sp4g26460.v2.2, Sp4g26470.v2.2, SpUn0309_0020.v2.2, SpUn0309_0030.v2.2
Brassicaceae	Brassica nigra	17	BniB01g002060.2N, BniB01g002070.2N, BniB01g002080.2N ... BniB01g006990.2N, BniB01g007010.2N, BniB01g042310.2N, BniB02g042720.2N, BniB06g002770.2N, BniB06g002790.2N, BniB06g006720.2N, BniB06g006740.2N, BniB06g016530.2N, BniB06g059690.2N, BniB08g024020.2N, BniB08g024030.2N, BniB08g027360.2N, BniB08g028940.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0074
Casuarinaceae	Casuarina glauca	5	Cgl04G0660, Cgl04G2646, Cgl04G2691, Cgl08G0156, Cgl08G0467
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno04g17860, gene.Cymno04g17870, gene.Cymno04g17880 ... gene.Cymno04g17890, gene.Cymno14g07300, gene.Cymno15g07620, gene.Cymno15g07640
Hydrocharitaceae	Thalassia testudinum	10	gene.Thate01g02490, gene.Thate01g02500, gene.Thate01g02510 ... gene.Thate06g07790, gene.Thate06g07810, gene.Thate06g07830, gene.Thate08g03350, gene.Thate08g03370, gene.Thate08g03380, gene.Thate08g03410
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.184, evm.TU.LG02.2790, evm.TU.LG10.158
Plantaginaceae	Plantago ovata	7	Pov_00006427, Pov_00016870, Pov_00016871, Pov_00016873 ... Pov_00019961, Pov_00020721, Pov_00020722
Plumbaginaceae	Limonium bicolor	1	Lb4G23533
Poaceae	Echinochloa crus-galli	24	AH02.2175, AH03.3665, AH03.3666, AH03.3669, AH04.2163 ... AH04.2178, AH07.406, AH08.297, AH09.2071, BH01.2534, BH02.2255, BH04.2322, CH03.4111, CH03.4113, CH03.4192, CH03.4195, CH03.4197, CH03.4198, CH03.4201, CH03.4202, CH04.1711, CH04.2593, CH08.369, Contig192.219
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_3AG0238200, gene-QOZ80_7AG0576670 ... gene-QOZ80_7AG0576680, gene-QOZ80_7AG0576700, gene-QOZ80_7AG0576710, gene-QOZ80_7AG0576720, gene-QOZ80_7AG0576760, gene-QOZ80_7AG0576790, gene-QOZ80_7AG0576810, gene-QOZ80_7AG0576820, gene-QOZ80_7BG0608070, gene-QOZ80_7BG0608080, gene-QOZ80_7BG0608090, gene-QOZ80_7BG0608100, gene-QOZ80_7BG0608110, gene-QOZ80_7BG0608120, gene-QOZ80_7BG0608130, gene-QOZ80_7BG0608160, gene-QOZ80_9BG0713190
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0397980.1.CDS1 ... HORVU.MOREX.r3.5HG0535630.1.CDS1, HORVU.MOREX.r3.7HG0752090.1
Poaceae	Lolium multiflorum	5	gene-QYE76_037234, gene-QYE76_037237, gene-QYE76_043844 ... gene-QYE76_070016, gene-QYE76_070018
Poaceae	Oryza coarctata	5	Oco13G012400, Oco13G012410, Oco13G012430, Oco13G012440 ... Oco14G013140
Poaceae	Oryza sativa	10	LOC_Os07g41850.1, LOC_Os07g41860.1, LOC_Os07g41890.1 ... LOC_Os07g41910.1, LOC_Os07g41920.1, LOC_Os07g41930.1, LOC_Os07g41980.1, LOC_Os07g42030.1, LOC_Os07g42040.1, LOC_Os07g42070.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G346800, gene-BS78_02G346900 ... gene-BS78_02G347000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101622, Pt_Chr0404879, Pt_Chr0404880, Pt_Chr0404881
Poaceae	Sporobolus alterniflorus	12	Chr0G018840, Chr16G004030, Chr17G003710, Chr19G002470 ... Chr19G002480, Chr19G002490, Chr24G015450, Chr27G014830, Chr27G014840, Chr28G011410, Chr28G011420, Chr28G011430
Poaceae	Thinopyrum elongatum	3	Tel1E01G635500, Tel3E01G813900, Tel3E01G814000
Poaceae	Triticum aestivum	10	TraesCS1B02G416000.1, TraesCS3D02G503600.1.cds1 ... TraesCS3D02G503700.1.cds1, TraesCS4B02G254100.1.cds1, TraesCS7A02G530800.1.cds1, TraesCS7B02G493500.1, TraesCS7B02G494900.1, TraesCS7B02G496800.1.cds1, TraesCS7D02G545500.1, TraesCS7D02G545700.1
Poaceae	Zea mays	1	Zm00001eb401330_P001
Poaceae	Zoysia japonica	8	nbis-gene-32922, nbis-gene-32923, nbis-gene-402 ... nbis-gene-404, nbis-gene-405, nbis-gene-406, nbis-gene-48102, nbis-gene-52220
Poaceae	Zoysia macrostachya	10	Zma_g3501, Zma_g5533, Zma_g5534, Zma_g5537, Zma_g5538 ... Zma_g6835, Zma_g6836, Zma_g6837, Zma_g6838, Zma_g6839
Portulacaceae	Portulaca oleracea	15	evm.TU.LG01.2120, evm.TU.LG02.1500, evm.TU.LG02.2612 ... evm.TU.LG02.2613, evm.TU.LG02.2614, evm.TU.LG02.2615, evm.TU.LG09.504, evm.TU.LG14.1292, evm.TU.LG14.1294, evm.TU.LG23.835, evm.TU.LG23.836, evm.TU.LG23.837, evm.TU.LG23.838, evm.TU.LG23.839, evm.TU.LG23.840
Posidoniaceae	Posidonia oceanica	3	gene.Posoc06g15670, gene.Posoc07g15520, gene.Posoc07g15530
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.60400.11, evm.TU.Scaffold_15_RagTag.227 ... evm.TU.Scaffold_15_RagTag.228, evm.TU.Scaffold_1_RagTag.1249
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-26454, nbisL1-mrna-4059, nbisL1-mrna-6361 ... nbisL1-mrna-6366, nbisL1-mrna-7002, nbisL1-mrna-7004
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-11734, nbisL1-mrna-13286, nbisL1-mrna-14640 ... nbisL1-mrna-17985, nbisL1-mrna-3480, nbisL1-mrna-3481
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17550, nbisL1-mrna-17551, nbisL1-mrna-17552 ... nbisL1-mrna-4191
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000001l.67, add.evm.TU.utg000001l.68 ... add.evm.TU.utg000009l.199
Rhizophoraceae	Kandelia obovata	1	Maker00004559
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-19767, nbisL1-mrna-21323, nbisL1-mrna-21324 ... nbisL1-mrna-21780
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-2718, nbisL1-mrna-2719, nbisL1-mrna-5622
Salicaceae	Populus euphratica	6	populus_peu02210, populus_peu20341, populus_peu20343 ... populus_peu26077, populus_peu29243, populus_peu29622
Solanaceae	Lycium barbarum	14	gene-LOC132599872, gene-LOC132599873, gene-LOC132599874 ... gene-LOC132601983, gene-LOC132607504, gene-LOC132615429, gene-LOC132625939, gene-LOC132630367, gene-LOC132632341, gene-LOC132633753, gene-LOC132644260, gene-LOC132644261, gene-LOC132645061, gene-LOC132645063
Solanaceae	Solanum chilense	13	SOLCI000112500, SOLCI000546800, SOLCI001874200 ... SOLCI002319900, SOLCI003012200, SOLCI004074600, SOLCI005784900, SOLCI006006800, SOLCI006006900, SOLCI006007000, SOLCI006007100, SOLCI006007200, SOLCI007367100
Solanaceae	Solanum pennellii	11	gene-LOC107014491, gene-LOC107015360, gene-LOC107021834 ... gene-LOC107023634, gene-LOC107024847, gene-LOC107027577, gene-LOC107028462, gene-LOC107029930, gene-LOC107030420, gene-LOC107032464, gene-LOC114073930
Tamaricaceae	Reaumuria soongarica	1	STRG.11566_chr02_-
Tamaricaceae	Tamarix chinensis	4	TC06G0759, TC07G0164, TC07G0165, TC07G0166