Basic Information
Locus ID:
Ag4G00567
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 22466968 | 22468350 | - | Ag4G00567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 34,089.40 Da | 54.62 | 69.90 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11454 | bHLH_AtIND_like | 219 | 275 | 7.20079E-28 | - |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 219 | 270 | 1.83E-9 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 213 | 268 | 4.0E-6 | IPR036638 |
| SMART | SM00353 | finulus | 224 | 267 | 2.2E-5 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37800.1 | RHD SIX-LIKE 1. | 0 |
| RefSeq | XP_017241136.1 | PREDICTED: transcription factor bHLH83-like [Daucus carota subsp. sativus] | 0 |
| Q9FJ00 | Putative transcription factor bHLH086 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A161WTH2 | BHLH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010739 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.834597 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.954691 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.764037 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.224066 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.241455 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.513495 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.903131 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.790784 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.100441 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.601293 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.258041 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.070703 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.713419 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.090819 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39856 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16650 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g027790 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg21632, Sbi_jg21633, Sbi_jg22179, Sbi_jg22180 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16110, Seu_jg16111 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008720 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62661, Sgl67220, Sgl67283 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017690, gene:ENSEOMG00000050543 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018380, CQ.Regalona.r1.2BG0020060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30190640 |
| Apiaceae | Apium graveolens | 1 | Ag4G00567 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G009790, scaffold028730G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705872 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.588.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G09934 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G66470.1, AT5G37800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018927m.g.v1.0, Thhalv10028239m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g21530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g043680.2N, BniB05g062460.2N, BniB06g060670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0660 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0635 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g10250, gene.Cymno11g02570 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g22550, gene.Thate03g02770, gene.Thate06g12630 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2639 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.572 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029833 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01956, Lb3G20904 |
| Poaceae | Echinochloa crus-galli | 11 | AH02.1149, AH06.1408, AH07.3182, BH02.958, BH06.1410 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0006930, gene-QOZ80_1BG0055630 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0219210.1, HORVU.MOREX.r3.6HG0608460.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_024696, gene-QYE76_024698, gene-QYE76_024734 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G000540, Oco02G000630, Oco03G019560, Oco04G020340 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g02110.1, LOC_Os02g48060.1, LOC_Os06g30090.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G091200, gene-BS78_04G250700 |
| Poaceae | Puccinellia tenuiflora | 10 | Pt_Chr0205892, Pt_Chr0205893, Pt_Chr0205894, Pt_Chr0206569 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G025080, Chr05G002840, Chr06G003910, Chr08G002060 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel6E01G504700, Tel6E01G504800, Tel6E01G505100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG002260, gene_TRIDC3BG001200 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS3A02G006300.1, TraesCS3B02G007700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb252360_P001, Zm00001eb334500_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22068, nbis-gene-32309, nbis-gene-7156 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14256, Zma_g17000, Zma_g7490 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.741, evm.TU.LG06.814, evm.TU.LG11.35 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g19150, gene.Posoc04g04750 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60356.4, evm.TU.Scaffold_3_RagTag.737 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1223 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2783, nbisL1-mrna-6579 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1115, nbisL1-mrna-6418 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.834, evm.TU.utg000019l.765 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012838 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5233 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13161 |
| Salicaceae | Populus euphratica | 2 | populus_peu09639, populus_peu24882 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623396 |
| Solanaceae | Solanum chilense | 1 | SOLCI000509400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010630 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0182 |
| Zosteraceae | Zostera marina | 3 | Zosma01g06840.v3.1, Zosma05g26160.v3.1, Zosma06g00510.v3.1 |